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IMAI YohsukeGraduate School of Engineering / Department of Mechanical EngineeringProfessor
Research activity information
■ Award- Dec. 2019 Asian Pacific Association for Computational Mechanics, APACM Award for Young Investigators in Computational Mechanics
- May 2019 日本計算工学会, 第24回計算工学講演会 グラフィックスアワード優秀賞Japan society
- May 2019 日本計算工学会, 第24回計算工学講演会 グラフィックスアワード特別賞(Meshman賞)Japan society
- Jul. 2018 Japan Association for Computational Mechanics, JACM Fellows AwardJapan society
- 17 Sep. 2017 日本機械学会, 日本機械学会計算力学部門 業績賞Japan society
- 04 Dec. 2015 青葉工学振興会, 第9回青葉工学振興会賞Publisher
- Jul. 2014 Dynamics of Capsules, Vesicles, and Cells in Flow, Best Poster AwardInternational society
- Apr. 2014 文部科学省, 平成26年度科学技術分野の文部科学大臣表彰 若手科学者賞International academic award
- Mar. 2014 Advances in Computation Fluid-Structure Interaction and Flow Simulation, Poster Award (Second Place)International society
- Aug. 2013 7th Asian Pacific Conference on Biomechanics, APCB2013 Award for Excellent ThesisInternational society
- Mar. 2013 Journal of Biomechanical Science and Engineering, JBSE Graphics of the Year AwardOfficial journal
- Jun. 2012 日本計算工学講演会, 第17回計算工学講演会 ベストペーパーアワードJapan society
- Jan. 2012 日本機械学会バイオエンジニアリング部門, 日本機械学会バイオエンジニアリング部門 瀬口賞Japan society
- Nov. 2011 Journal of Biomechanical Science and Engineering, JBSE Papers of the Year AwardOfficial journal
- Jul. 2010 日本計算力学連合, JACM Award for Young Investigators in Computational MechanicsPublisher
- Apr. 2010 日本機械学会, 日本機械学会奨励賞(研究)Publisher
- Jan. 2010 青葉工学振興会, 第15回青葉工学研究奨励賞Publisher
- Dec. 2008 International Conference on Biomedical Engineering, Young Investigator Award Merit PrizeInternational society
- Feb. 2007 財団法人手島工業教育資金団, 手島記念研究賞(博士論文賞)Publisher
- Dec. 2006 第20回数値流体力学シンポジウム実行委員会, 第20回数値流体力学シンポジウム ベストCFDグラフィックス・アワード最優秀賞Japan society
- Nov. 2006 日本機械学会計算力学部門, 日本機械学会第19回計算力学講演会 ビジュアリゼーションコンテスト優秀作品賞Japan society
- Dec. 2005 第19回数値流体力学シンポジウム実行委員会, 第19回数値流体力学シンポジウム ベストCFDグラフィックス・アワード最優秀賞Japan society
- Nov. 2005 日本機械学会計算力学部門, 日本機械学会第18回計算力学講演会 ビジュアリゼーションコンテスト最優秀作品賞Japan society
- Dec. 2004 第18回数値流体力学シンポジウム実行委員会, 第18回数値流体力学シンポジウム ベストCFDグラフィックス・アワード優秀賞Japan society
- This study evaluates gastric electrophysiology in relation to the menstrual cycle using a novel noninvasive high-resolution methodology, revealing substantial variations in gastric activity with menstrual cycling and menopause. Gastric slow-wave frequency is significantly higher in the luteal versus follicular menstrual phase. Computational modeling predicts that this difference translates to higher rates of gastric mixing and liquid emptying in the luteal phase, which is consistent with previous experimental data evaluating menstrual cycling effects on gastric emptying.American Physiological Society, Jul. 2024, American Journal of Physiology-Gastrointestinal and Liver Physiology, 327(1) (1), G47 - G56Scientific journal
- Understanding the growth-induced deformation of soft materials in viscous environments is important for a variety of problems in nature and engineering. Here, we focus on the fluid–structure interaction of a hyperelastic sheet growing in an incompressible Newtonian fluid in the Stokes flow regime. We develop a computational framework for simulating this problem, where the isogeometric boundary integral method is used with the Kirchhoff–Love shell formulation and elastic–plastic decomposition of the deformation gradient tensor. We quantify the relative effects of the growth rate, the sheet bending rigidity, and the fluid viscosity on the fold formation and development of the growing sheet. Our results suggest that the viscous resistance to in-plane deformation promotes fold formation, whereas the viscous resistance to out-of-plane deformation suppresses fold development. We also investigate the effects of the thickness and aspect ratio of the rectangular sheet. Finally, we compare the growth- and prestrain-induced deformations to find a common behavior of sheets under viscous environments.AIP Publishing, May 2024, Physics of Fluids, 36(5) (5)Scientific journal
- Effects of magnetic field applied perpendicular to a shear plane in shear flow on the deformation of a ferrofluid droplet are numerically investigated. The boundary integral method is employed to solve the two-phase Stokes flow under a uniform magnetic field. When the magnetic field is applied perpendicular to the shear plane, the deformation of the droplet in the shear plane decreases. The magnetic field causes the droplet to elongate in the y-direction, and its cross-sectional radius in shear plane decreases. Consequently, the apparent capillary number in the shear plane decreases, thereby suppressing the droplet deformation. Droplet breakup is also suppressed by imposing a magnetic field perpendicular to the shear plane, thereby increasing the critical capillary numbers. The critical capillary numbers for the magnetic Bond numbers Bo = 2.0 and 4.0 increase to approximately 110% and 130%, respectively, than those without magnetic field. Furthermore, an equation for the theoretical prediction of the droplet deformation under a magnetic field in shear flow is presented, which is based on the small deformation theory, the decrease in the cross-sectional radius, and the boundary conditions at the droplet interface. The theoretical prediction agrees well with the numerical results for the variation in the magnetic susceptibility of the droplet as well as the viscosity ratio between the external fluid and the ferrofluid droplet under a small deformation. The critical capillary numbers under a magnetic field can also be predicted by using the numerical results without a magnetic field.AIP Publishing, Mar. 2024, Physics of Fluids, 36(3) (3)Scientific journal
- Elsevier BV, Mar. 2024, Journal of Fluids and Structures, 125, 104081 - 104081Scientific journal
- Elsevier BV, Jan. 2024, Journal of Fluids and Structures, 124, 104022 - 104022Scientific journal
- The Japan Society of Mechanical Engineers, 2023, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2023.34, 2B05, Japanese
- The Japan Society of Mechanical Engineers, 2023, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2023.34, 2G09, Japanese
- The Japan Society of Mechanical Engineers, 2023, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2023.34, 1B02, Japanese
- The amplitude and frequency of peristaltic contractions are two major parameters for assessing gastric motility. However, it is not fully understood how these parameters affect the important functions of the stomach, such as gastric mixing and emptying. This study aimed to quantify the effects of peristaltic amplitude and frequency on gastric mixing and emptying using computational fluid dynamics simulation of gastric flow with an anatomically realistic model of the stomach. Our results suggest that both the increase and decrease in peristaltic amplitude have a significant impact on mixing strength and emptying rate. For example, when the peristaltic amplitude was 1.2 times higher than normal, the emptying rate was 2.7 times faster, whereas when the amplitude was half, the emptying rate was 4.2 times slower. Moreover, the emptying rate increased more than proportionally with the peristaltic frequency. The nearest contraction wave to the pylorus and the subsequent waves promoted gastric emptying. These results suggest the importance of maintaining parameters within normal ranges to achieve healthy gastric function.The Royal Society, Jan. 2023, Journal of The Royal Society Interface, 20(198) (198)[Refereed]Scientific journal
- Peristaltic pumping is the primary mechanism of food transport in the human intestine. Intestinal contents are often modeled as power-law fluids with low-behavior indices ( n < 1). Peristaltic flows were studied for periodic contraction waves ([Formula: see text]) with infinitely long wavelengths ([Formula: see text]) in the Stokes flow regime ([Formula: see text]). However, the peristaltic flow generated by an isolated contraction wave with a short wavelength at nonzero Reynolds numbers is more relevant to physiological conditions. In this study, we investigated the peristaltic transport of a power-law fluid with a low behavior index of n = 0.21 at nonzero Reynolds numbers up to Re = 10, generated by a single short contraction wave. First, we investigated the analytical solution for the peristaltic transport of the power-law fluid for [Formula: see text] and [Formula: see text]. The analytical solution shows that the discharge flow rate of a power-law fluid generated by a single contraction wave is much smaller than that of a Newtonian fluid ( n = 1). Next, we investigated the peristaltic transport for [Formula: see text] 10 using the cumulant lattice Boltzmann method. The numerical results demonstrate that the discharge flow rate for the power-law fluid sharply increased owing to the inertia effect. The power-law fluid induces an asymmetric flow field with respect to the contraction wave at smaller Reynolds numbers than Newtonian fluids. The inertia effect was increased by the sharpness of the contraction wave. These results suggest that intestinal contents can be transported more quickly by an isolated contraction wave with a shorter wavelength when the contents have low consistency indices or when the contraction wave has a large propagation velocity.AIP Publishing, Nov. 2022, Physics of Fluids, 34(11) (11), 111911 - 111911[Refereed]Scientific journal
- Ciliary motility disorders are known to cause hydrocephalus. The instantaneous velocity of cerebrospinal fluid (CSF) flow is dominated by artery pulsation, and it remains unclear why ciliary dysfunction results in hydrocephalus. In this study, we investigated the effects of cilia-induced surface velocity on CSF flow using computational fluid dynamics. A geometric model of the human ventricles was constructed using medical imaging data. The CSF produced by the choroid plexus and cilia-induced surface velocity were given as the velocity boundary conditions at the ventricular walls. We developed healthy and reduced cilia motility models based on experimental data of cilia-induced velocity in healthy wild-type and Dpcd-knockout mice. The results indicate that there is almost no difference in intraventricular pressure between healthy and reduced cilia motility models. Additionally, it was found that newly produced CSF from the choroid plexus did not spread to the anterior and inferior horns of the lateral ventricles in the reduced cilia motility model. These findings suggest that a ciliary motility disorder could delay CSF exchange in the anterior and inferior horns of the lateral ventricles.The Royal Society, Aug. 2022, Journal of The Royal Society Interface, 19(193) (193)[Refereed]Scientific journal
- American Physical Society (APS), Jun. 2022, Physical Review Fluids, 7(6) (6)[Refereed]Scientific journal
- The Japan Society of Mechanical Engineers, 2022, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2022.33, 1F15, Japanese
- The Japan Society of Mechanical Engineers, 2022, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2022.33, 1F18, Japanese
- American Physical Society (APS), Sep. 2021, Physical Review Fluids, 6(9) (9)[Refereed]Scientific journal
- Wiley, Jan. 2021, Physiological Reports, 8(24) (24)[Refereed]Scientific journal
- The cerebral vasculature has a complex and hierarchical network, ranging from vessels of a few millimeters to superficial cortical vessels with diameters of a few hundred micrometers, and to the microvasculature (arteriole/venule) and capillary beds in the cortex. In standard imaging techniques, it is difficult to segment all vessels in the network, especially in the case of the human brain. This study proposes a hybrid modeling approach that determines these networks by explicitly segmenting the large vessels from medical images and employing a novel vascular generation algorithm. The framework enables vasculatures to be generated at coarse and fine scales for individual arteries and veins with vascular subregions, following the personalized anatomy of the brain and macroscale vasculatures. In this study, the vascular structures of superficial cortical (pial) vessels before they penetrate the cortex are modeled as a mesoscale vasculature. The validity of the present approach is demonstrated through comparisons with partially observed data from existing measurements of the vessel distributions on the brain surface, pathway fractal features, and vascular territories of the major cerebral arteries. Additionally, this validation provides some biological insights: (i) vascular pathways may form to ensure a reasonable supply of blood to the local surface area; (ii) fractal features of vascular pathways are not sensitive to overall and local brain geometries; and (iii) whole pathways connecting the upstream and downstream entire-scale cerebral circulation are highly dependent on the local curvature of the cerebral sulci.Jun. 2020, PLoS computational biology, 16(6) (6), e1007943, English, International magazine[Refereed]Scientific journal
- Last, Japan Society of Mechanical Engineers, 2020, Journal of Biomechanical Science and Engineering[Refereed]Scientific journal
- This study investigated hemodynamic changes in the thoracic aorta and aortic arch branches before and after aortic valve replacement (AVR) by 4D-flow MRI in patients with aortic valve stenosis (AS). Thoracic 4D-flow MRI was performed in 10 AS patients before and after AVR (mean 27 ± 1.9 days). Fifteen aortic planes and 3 aortic arch branches planes were set to evaluate the mean volume flow rate in each plane during a cardiac cycle and the angle between the main flow direction in a specified plane and the axial direction of the aorta. We also focused on the distribution and magnitude of helicity density to evaluate the flow complexity. A significant increase in the volume flow rate after AVR was found in the ascending aorta (before 59.2 ± 8.7 mL/s vs after 77.3 ± 6.2 mL/s, P < 0.05) and the aortic arch branches (before 26.5 ± 2.8 mL/s vs after 35.8 ± 3.3 mL/s, P < 0.001). The flow angle significantly decreased in the ascending aorta (before 39.2 ± 2.7 degree vs after 25.2 ± 1.7°, P < 0.0001) and the arch aorta (before 19.3 ± 2.0 degree vs after 13.4 ± 0.9°, P < 0.001). The volume flow rate in the ascending aorta and the arch branches increased within 1 month after AVR, showing an increased blood supply to the upper body, including to the brain. The postoperative change was accompanied with an increased blood flow in the ascending aorta and a decreased flow complexity proximal to the arch branches.2020, Seminars in thoracic and cardiovascular surgery, 32(1) (1), 25 - 34, English, International magazine[Refereed]Scientific journal
- Last, Nov. 2019, Physical Review Fluids, 4, 113601, English[Refereed]Scientific journal
- Nov. 2019, Journal of Biomechanical Science and Engineering, 14(3) (3), 18 - 00535, English[Refereed]Scientific journal
- Common practices to improve the ability to swallow include modifying physical properties of foods and changing the posture of patients. Here, we quantified the effects of the viscosity of a liquid bolus and patient posture on the bolus pathway and pharyngeal residue using a computational fluid dynamics simulation. We developed a computational model of an impaired pharyngeal motion with a low pharyngeal pressure and no pharyngeal adaptation. We varied viscosities from 0.002 to 1 Pa·s and postures from -15° to 30° (from nearly vertical to forward leaning). In the absence of pharyngeal adaptation, a honey-like liquid bolus caused pharyngeal residue, particularly in the case of forward-leaning postures. Although the bolus speed was different among viscosities, the final pathway was only slightly different. The shape, location, and tilting of the epiglottis effectively invited a bolus to two lateral pathways, suggesting a high robustness of the swallowing process.NEW & NOTEWORTHY Thickening agents are often used for patients with dysphagia. An increase in bolus viscosity not only reduces the risk of aspiration but also can cause a residual volume in the pharynx. Because information obtained from videofluoroscopic swallowing studies is only two-dimensional, measurement of pharyngeal residue is experimentally difficult. We successfully quantified the three-dimensional bolus pathway and the pharyngeal residual volume using computational modeling and simulation.Nov. 2019, American Journal of Physiology Gastrointestinal and Liver Physiology, 317(6) (6), G784 - G792, English, International magazine[Refereed]Scientific journal
- Proper coordination of gastric motor functions is required for healthy gastric emptying. However, pyloric function may be impaired by functional disorders or surgical procedures. Here, we show how coordination between pyloric closure and antral contraction affects the emptying of liquid contents. We numerically simulated fluid dynamics using an anatomically realistic gastrointestinal geometry. Peristaltic contractions in the proximal stomach resulted in gastric emptying at a rate of 3-8 ml min-1. When the pylorus was unable to close, the emptying rate increased to 10-30 ml min-1, and instantaneous retrograde flow from the duodenum to the antrum occurred during antral relaxation. Rapid emptying occurred if the pylorus began to open during the terminal antral contraction, and the emptying rate was negative if the pylorus only opened during the antral relaxation phase. Our results showed that impaired coordination between antral contraction and pyloric closure can result in delayed gastric emptying, rapid gastric emptying and bile reflux.Aug. 2019, Journal of the Royal Society Interface, 16(157) (157), 20190266 - 20190266, English, International magazine[Refereed]Scientific journal
- Aug. 2019, Journal of Fluid Mechanics, 872, 818 - 848, English[Refereed]Scientific journal
- Springer Basel, 2018, Modeling and Simulation in Science, Engineering and Technology, 213 - 251, EnglishIn book
- Sep. 2017, BIOPHYSICAL JOURNAL, 113(5) (5), 1163 - 1172, English[Refereed]Scientific journal
- Aug. 2017, JOURNAL OF BIOMECHANICS, 61, 242 - 249, English[Refereed]Scientific journal
- A BOUNDARY ELEMENT METHOD FOR CELLULAR SCALE PHYSIOLOGICAL FLOW PROBLEMS: PASSIVE MOTIONS OF RED BLOOD CELLS AND ACTIVE MOTIONS OF CILIA AND FLAGELLAYamaguchi Medal 受賞講演Jul. 2017, The 26th Congress of the International Society of Biomechanics (ISB 2017), English[Invited]
- Jul. 2017, SCIENTIFIC REPORTS, 7, 5381, English[Refereed]Scientific journal
- May 2017, MICROCIRCULATION, 24(4) (4), e12355, English[Refereed]Scientific journal
- Apr. 2017, 19th International Conference on Finite Elements in Flow Problems, EnglishIntegrated nanobiomechanics of the living system
- Dec. 2016, Abstracts Book of the 16th International Conference on Biomedical Engineering, 167, EnglishRELATIONSHIP BETWEEN PERISTALTIC CONTRACTION AND GASTRIC MIXING
- Dec. 2016, Abstracts Book of the 16th International Conference on Biomedical Engineering, 163, EnglishDEVELOPMENT OF A BIOMECHANICAL MODEL OF CELL BEHAVIOR SUBJECTED TO CYCLIC STRETCH
- Dec. 2016, Abstracts Book of the 16th International Conference on Biomedical Engineering, 54, EnglishA NUMERICAL ANALYSIS OF THE LATERAL MIGRATION OF FLOWING CELLS
- Dec. 2016, AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 311(6) (6), G1114 - G1121, English[Refereed]Scientific journal
- Nov. 2016, The 69th Annual Meetin g of The American Physical Society, Bulletin of the American Physical Society, DED 2016, 61, 72, EnglishNumerical analysis of cell adhesion in capillary flow
- Nov. 2016, JOURNAL OF FLUID MECHANICS, 806, 102 - 128, English[Refereed]Scientific journal
- Nov. 2016, AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 311(5) (5), G895 - G902, English[Refereed]Scientific journal
- Aug. 2016, AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY, 311(2) (2), H395 - H403, English[Refereed]Scientific journal
- Jul. 2016, Summer Biomechanics, Bioengineering and Biotransport Conference, 742, EnglishSimilarities and differences between flow mode of a leukocyte and circulating tumor cell in microvessels
- Jul. 2016, JOURNAL OF BIOMECHANICS, 49(11) (11), 2221 - 2228, English[Refereed]Scientific journal
- Jul. 2016, JOURNAL OF BIOMECHANICS, 49(11) (11), 2249 - 2254, English[Refereed]Scientific journal
- Springer New York LLC, Apr. 2016, Annals of Biomedical Engineering, 44(4) (4), 1323, English
- Taylor and Francis Ltd, Mar. 2016, Journal of Plastic Surgery and Hand Surgery, 50(3) (3), 180 - 183, English[Refereed]Scientific journal
- Feb. 2016, JOURNAL OF FLUID MECHANICS, 789, 481 - 499, English[Refereed]Scientific journal
- 2016, The World Congress on Engineering 2016, ICSBB15, 515 - 518, EnglishBio-Micropump by Using A Flagellate Propulsive Force of Escherichia coli[Refereed]International conference proceedings
- Jan. 2016, JOURNAL OF FLUID MECHANICS, 786, 110 - 127, English[Refereed]Scientific journal
- Jan. 2016, PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 472(2185) (2185), 20150604, English[Refereed]Scientific journal
- 2016, SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS, 17(1) (1), 454 - 461, English[Refereed]Scientific journal
- Dec. 2015, PHYSICAL REVIEW E, 92(6) (6), 063011, English[Refereed]Scientific journal
- Dec. 2015, PHYSICAL REVIEW E, 92(6) (6), 063027, English[Refereed]Scientific journal
- Nov. 2015, 68th Annual Meeting of the Division of Fluid Dynamics, Bulletin of the American Physical Society, DFD 2015, 60, 116, EnglishQuantification of hydrodynamic factors influencing cell lateral migration
- Nov. 2015, 68th Annual Meeting of the Division of Fluid Dynamics, Bulletin of the American Physical Society, DFD 2015, 60, 72, EnglishDeformable micro torque swimmer
- Oct. 2015, The 3rd International Workshops on Advances in Computational Mechanics(IWACOM-III), 128, EnglishRheological analysis of dense capsule suspensions – effect of volume fraction
- Oct. 2015, The 3rd International Workshops on Advances in Computational Mechanics(IWACOM-III), 47, EnglishGraphics processing unit computing of cellular flow and adhesion in microvessels
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, PS8-15, EnglishMechanics of Nodal Cilia in Early Mouse Embryo
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, PS3-7, EnglishDevelopment of a Numerical Model of Cytoskeleton Dynamics
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, PS3-6, EnglishClarification of Relationship between Gastric Mixing and Movement of Wall
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, PS3-2, EnglishOrientation Angle of a Single Red Blood Cell during Sedimentation
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, PS3-1, EnglishHydrodynamic Interaction between the Small Microparticles and Red Blood Cells in Microchannel
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, PS1-10, EnglishSwimming Behavior of a Model Ciliate near a Fluid-Air or a Fluid-Solid Interface
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, OS2-2, EnglishA Numerical Simulation of Cytoadhesion and Rosette Formation of Red Blood Cells Infected by Malaria
- Sep. 2015, The 8th Asian-Pacific Conference on Biomechanics, OS2-1, EnglishEffect of Flow Curvature on the Migration of Blood Cells
- Sep. 2015, Computational Fluid Dynamics (CFD) in Medicine and Biology II, EnglishSimulations of a swimming microorganism near an fluid-air or an fluid-solid interface
- Sep. 2015, Computational Fluid Dynamics (CFD) in Medicine and Biology II, EnglishSeparation of motile bacteria using drift force near a wall
- BioMed Central Ltd., Jul. 2015, Cilia, (1) (1), English[Refereed]Scientific journal
- Jul. 2015, 13th U.S. National Congress on Computational Mechanics, EnglishCellular Scale Physiological Flow: Active Swimming Sperm Cells and Passive Flowing Red Blood Cells
- Jul. 2015, 13th U.S. National Congress on Computational Mechanics, EnglishViscosity Reduction in Bimodal Suspensions of Two Types of Capsules
- Jun. 2015, SB3C2015, 223, EnglishPeclet Number Of Ciliary Transport On The Surface Of The Tracheal Lumen
- Jun. 2015, SB3C2015, 256, EnglishA Computational Study Of Red Blood Cells In Stokes Flow: From Single Cellular Mechanics To Suspension Rheology
- Mar. 2015, The 18th International Conference on Finite Elements in Flow Problems FEF2015, 23, EnglishRheology of A Red Blood CEll Suspension Computing with A Boundary Element-Finite Wlement Coupled Method
- 2015, International Symposium on Integrated Nanobiomechanics, EnglishVisualization of intestinal peristalsis of mosquito midgut by using micro x-ray imagingInternational conference proceedings
- Jan. 2015, ANNALS OF BIOMEDICAL ENGINEERING, 43(1) (1), 238 - 257, English[Refereed]Scientific journal
- 2015, JOURNAL OF FLUID MECHANICS, 762, 288 - 301, English[Refereed]Scientific journal
- Although boundary element (BE) based methods are highly accurate for simulating capsule suspensions in Stokes flows, computational time has been a major issue, even when only a few capsules are simulated. We propose a full graphics processing unit (GPU) implementation of a numerical method coupling the BE method of fluid mechanics with the finite element method of membrane mechanics. In single GPU computing, the performance achieves 0.12 TFlop/s when computing one capsule (2562 nodes and 5120 elements) and 0.29 TFlop/s for two capsules. The performance increases with the number of capsules, achieving a maximum of 0.59 TFlop/s. We also implement a multi-GPU method with the data communication overlapping the computation. A weak scaling test shows perfect scalability for any number of computational nodes per GPU, indicating that the communication time is completely hidden. For a practical use of the present results, we estimate the computational time required for 10000 time steps. When we simulate one capsule and two capsules on one GPU, only 2.0 and 9.1 minutes are required to complete the simulation, respectively, and a simulation with 256 capsules on 16 GPUs takes 3.8 days.The Japan Society of Mechanical Engineers, Dec. 2014, Journal of Biomechanical Science and Engineering, 9(3) (3), 14-00039 - 00039-14-00039, English[Refereed]Scientific journal
- Nov. 2014, The Sixth International Symposium on Aero Aqua Bio-mechanisms, 37, EnglishSwimming behavior of a model microorganism at a fluid-air interface
- Oct. 2014, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 90(4) (4)[Refereed]Scientific journal
- Oct. 2014, COMPUTATIONAL MECHANICS, 54(4) (4), 933 - 941, English[Refereed]Scientific journal
- Oct. 2014, PHYSICAL REVIEW E, 90(4) (4), 043009, English[Refereed]Scientific journal
- Sep. 2014, THE FOURTH JAPAN-SWITZERLAND WORKSHOP ON BIOMECHANICS, 102, EnglishModeling of Flow in the Stomach
- Japan Soc. of Med. Electronics and Biol. Engineering, Aug. 2014, Transactions of Japanese Society for Medical and Biological Engineering, 52, 45, English[Refereed]Scientific journal
- Jul. 2014, 11th World Congress on Computational Mechanics, 303, EnglishA numerical method for simulating gastricflow
- Jul. 2014, 11th World Congress on Computational Mechanics, 303, EnglishRheological analysis of capsule suspensions containing different size capsules
- Jul. 2014, Dyna Caps 2014, EnglishRheological analysis of dense capsule suspension under simple shear flow condition
- Jul. 2014, Dyna Caps 2014, EnglishNumerical Analysis of Capsule Suspensions Containing Two Different siza Capsules
- Jul. 2014, Dyna Caps 2014, EnglishCollective swimming of ellipoidal squimers
- Jul. 2014, Dyna Caps 2014, EnglishMargination of large cells in microchannels
- Jul. 2014, 7th WORLD CONGRESS OF BIOMECHANICS, EnglishDevelopment of a numerical model for analysis of ciliary motions
- Jul. 2014, 7th WORLD CONGRESS OF BIOMECHANICS, EnglishEffect of Shear Gradient and Wall on Capsule Lateral Migration
- Jul. 2014, 7th WORLD CONGRESS OF BIOMECHANICS, EnglishMulti-scale computational study on the formation and destruction of primary thrombus under the influence of the blood flow and red blood cells
- Jul. 2014, 7th WORLD CONGRESS OF BIOMECHANICS, EnglishA numerical simulation on the motion ofmalaria-infected cells in microcirculatory blood flow
- Jul. 2014, 7th WORLD CONGRESS OF BIOMECHANICS, EnglishNumerical analysis of hydrodynamic behavior of circulating tumor cells in microchannels
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 17 - 18, EnglishDevelopment of an Intracellular Structure Model for Ciliary Motion Analysis
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 15 - 16, EnglishNutrient Uptake in a Suspension of Model Microorganisms
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 13 - 14, EnglishCapsule Lateral Migration in an Unbounded Plane Poiseuille Flow and Near-wall Shear Flow
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 11 - 12, EnglishRheology of a Red Blood Cell Suspension from Dilute to Semi-dilute Regime
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 9 - 10, EnglishHydrodynamic Interction between a Circulating Tumor Cell and Blood Cells in Microcirculation
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 7 - 8, EnglishNumerical Modeling of the Adhesion of Red Blood Cells Infected by Plasmodium Falciparum Malaria in Microcirculatory Blood Flow
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 5 - 6, EnglishA Numerical Analysis of Cellular Adhesion to Planar Wall Mediated by Ligand-Receptor Interactions
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 3 - 4, EnglishComputational Study on Thrombogenesis
- Jul. 2014, Internationnal Symposium on Integrated Nanobiomechanics, 1 - 2, EnglishShear Stress Distribution in the Stomach
- Jul. 2014, CYTOSKELETON, 71(7) (7), 412 - 422, English[Refereed]Scientific journal
- Apr. 2014, COMPSAFE, 347 - 348, EnglishNutrient uptake in a suspension of model microorganisms
- Mar. 2014, Advances in Computational Fluid-Structure Interaction and Flow Simulation, Poster Session, EnglishRheological analysis of dense capsule suspension under Stokes flow condition
- Jan. 2014, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 89(1) (1), English[Refereed]Scientific journal
- Kluwer Academic Publishers, 2014, Lecture Notes in Computational Vision and Biomechanics, 12, 101 - 117, English[Refereed]Scientific journal
- Jan. 2014, PHYSICAL REVIEW E, 89(1) (1), 013008, English[Refereed]Scientific journal
- Jan. 2014, AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY, 306(2) (2), L144 - L151, English[Refereed]Scientific journal
- 2014, LAB ON A CHIP, 14(5) (5), 1023 - 1032, English[Refereed]Scientific journal
- American Physiological Society, 2014, Physiological Reports, 2(6) (6), e12037, English[Refereed]Scientific journal
- Dec. 2013, APCOM2013 & ISCM2013 Conference Handbook, 15, EnglishA numerical analysis of a capsule containing multiple small capsules in simple shear flow
- Dec. 2013, APCOM2013 & ISCM2013 Conference Handbook, 18, EnglishNumerical analysis of margination of a cancer cell in microcirculation
- Dec. 2013, The15th International Conference on Biomedical Enginnering, 17 - 18, EnglishSolid particle motion in the stomach during gastric mixing
- Nov. 2013, Bulletin of the American Physical Society, 58, 409, EnglishNutrient uptake in a suspension of squirmers
- Nov. 2013, Bulletin of the American Physical Society, 58, 97, EnglishViscoelasticity of dilute capsule suspension under Stokes flows
- Nov. 2013, 7th East Asian Consortium on Biomedical Engineering, Proceeding Book, 80 - 81, EnglishViscosity of Dense Capsule Suspension Under Simple Shear FLow Condition
- Nov. 2013, 7th East Asian Consortium on Biomedical Engineering, Proceeding Book, 78 - 79, EnglishMargination of leukocyte in different sizes of circular micro-channel
- Oct. 2013, PLoS ONE, 8(10) (10), e75238, English[Refereed]Scientific journal
- Sep. 2013, MICROVASCULAR RESEARCH, 89, 95 - 106, English[Refereed]Scientific journal
- Aug. 2013, APCB2013 Proceedings, S12 - 002, EnglishEffect of Aeration on the Bioconvection Pattern in a Microalgae Suspension
- Aug. 2013, APCB2013 Proceedings, S4 - 3, EnglishModeling of cytoadhesion in malaria infection
- Aug. 2013, APCB2013 Proceedings, S4 - 020, EnglishMechanism of capsule migration near a plane wall
- Aug. 2013, APCB2013 Proceedings, S4 - 019, EnglishNumerical simulation of motion of solid particles in the stomach
- Aug. 2013, APCB2013 Proceedings, S4 - 3, EnglishMargination of white blood cell in various sizes of circular micro-channel
- Aug. 2013, APCB2013 Proceedings, S4 - 014, EnglishCollective Swimming of Ellipsoidal Microorganisms
- Aug. 2013, APCB2013 The7thAsian Pacific Conference on Biomechanics, ILS4 - 009, EnglishIntegrated Biomechanics for Physiological Flow Problems
- Jun. 2013, COMPDYN 2013, S2090, EnglishCOMPUTATIONAL BIOMECHANICS ON BLOOD FLOW FROM CELLULAR TO
- Jun. 2013, Journal of Fluid Mechanics, 724, 154 - 174, English[Refereed]Scientific journal
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 52 - 53, EnglishThe near-wall motion of a capsule in stokes flowInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 42 - 43, EnglishSimulation of nutrient uptake of a swimming model microorganism by boundary element methodInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 38 - 39, EnglishNumerical simulation of adhesion of malaria-infected red blood cellsInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 44 - 45, EnglishNumerical analysis of swimming microorganisms by a boundary element methodInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 48 - 49, EnglishNumerical analysis of dynamics of solid particles in the stomachInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 36 - 37, EnglishMargination of various cells in microcirculationInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 78 - 79, EnglishGradient diffusion of red blood cells in blood flow through a Y-shape microchannelInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 104 - 105, EnglishA numerical analysis of complex viscosity of dilute capsule suspensionInternational conference proceedings
- Mar. 2013, 6th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 106 - 107, EnglishA numerical analysis of bimodal capsule suspensionsInternational conference proceedings
- Feb. 2013, Journal of Biomechanics, 46(3) (3), 548 - 553, English[Refereed]Scientific journal
- 2013, American Journal of Physiology - Gastrointestinal and Liver Physiology, 304(5) (5), G536 - G542, English[Refereed]Scientific journal
- Dec. 2012, MEDICAL ENGINEERING & PHYSICS, 34(10) (10), 1411 - 1420, English[Refereed]Scientific journal
- Nov. 2012, PHYSICAL REVIEW E, 86(5) (5), 056321, English[Refereed]Scientific journal
- Nov. 2012, Bulletin of the American Physical Society 65th Annual Meeting of the APS Division of Fluid Dynamics, 331 - 331, EnglishOff-plane motion of a non-spherical capsule in simple shear flowInternational conference proceedings
- Nov. 2012, Bulletin of the American Physical Society 65th Annual Meeting of the APS Division of Fluid Dynamics, 334 - 334, EnglishMeasurement of ciliary flow generated on the surface of tracheal lumenInternational conference proceedings
- Nov. 2012, Bulletin of the American Physical Society 65th Annual Meeting of the APS Division of Fluid Dynamics, 107 - 107, EnglishHydrodynamical entrapment of ciliates at the air-liquid interfaceInternational conference proceedings
- Nov. 2012, Bulletin of the American Physical Society 65th Annual Meeting of the APS Division of Fluid Dynamics, 330 - 330, EnglishGradient diffusion of red blood cells in blood flow through a Y-shape microchannelInternational conference proceedings
- Nov. 2012, Bulletin of the American Physical Society 65th Annual Meeting of the APS Division of Fluid Dynamics, 330 - 330, EnglishAnalysis of red blood cell behavior in a narrow tubeInternational conference proceedings
- Nov. 2012, Bulletin of the American Physical Society 65th Annual Meeting of the APS Division of Fluid Dynamics, 49 - 49, English3D-PTV measurement of the phototactic movement of algae in shear flowInternational conference proceedings
- Oct. 2012, JOURNAL OF BIOMECHANICS, 45(15) (15), 2684 - 2689, English[Refereed]Scientific journal
- Oct. 2012, International Computational Mechanics Symposium 2012 (USB), USB Memory, EnglishLateral migration of capsules in a near-wall shear flowInternational conference proceedings
- Oct. 2012, International Computational Mechanics Symposium 2012, USB Memory, EnglishDevelopment of a GPU-Implemented BEM solver for biological cell suspensionsInternational conference proceedings
- Sep. 2012, Computational Modelling of Objects Represented in Images: Fundamentals, Methods and Applications, 239 - 242, EnglishGPU computing for patient-specific model of pulmonary airflow
- Sep. 2012, 9th International Conference on Flow Dynamics Proceedings, 732 - 733, EnglishRole of fluid mechanics in collective motions of bacteriaInternational conference proceedings
- Sep. 2012, ECCOMAS 2012 Congress Proceedings, CD-ROM, EnglishComputational analysis on the mechanical interaction between a thrombus and red blood cellsInternational conference proceedings
- Aug. 2012, Abstract Book of the 23rd International Congress of Theoretical and Applied Mechanics, 106 - 106, EnglishReorientation of a non-spherical micro-capsule in shear flowInternational conference proceedings
- Jul. 2012, Biorheology, 49, 181 - 181, EnglishParticle based simulation of microcirculation using a parallel computationInternational conference proceedings
- Jul. 2012, MEDICAL ENGINEERING & PHYSICS, 34(6) (6), 725 - 732, English[Refereed]Scientific journal
- Jun. 2012, Softflow 2012 – Biological Complex Fluids, 36 - 37, EnglishHydrodynamic entrapment of ciliates at the air-liquid interfaceInternational conference proceedings
- Jun. 2012, Softflow 2012 – Biological Complex Fluids, 76 - 76, EnglishDynamics of capsules near a plane wallInternational conference proceedings
- Jun. 2012, JOURNAL OF BIOMECHANICS, 45(10) (10), 1809 - 1815, English[Refereed]Scientific journal
- May 2012, IFMBE Proceedings, World Congress on Medical Physics and Biomedical Engineering, CD-ROM, EnglishEnergy efficiency in collective motions of swimming bacteriaInternational conference proceedings
- Mar. 2012, Biological Flow: A Conference to Celebrate the 70th Birthday of Timothy J. Padley FRS, 38, EnglishComputational biomechanics of physiological flow
- Mar. 2012, 18th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 153 - 154, EnglishRheology of a dilute suspention of red blood cells in simple shear flowInternational conference proceedings
- Mar. 2012, 18th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 111 - 112, EnglishQuantifying characteristics of blood cell at dense cellullar flowInternational conference proceedings
- Mar. 2012, 18th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 115 - 116, EnglishHydrodynamic entrapment of ciliates at the interface fluid-airInternational conference proceedings
- Mar. 2012, 18th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 145 - 146, EnglishEffect of constitutive law on the lateral migration of a capsule near a wallInternational conference proceedings
- Mar. 2012, 18th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 109 - 110, EnglishCollective Diffusion of red blood cells from high concentration to lowInternational conference proceedings
- Mar. 2012, 18th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 61 - 64, EnglishA particle model of cellular flow in microcirculationInternational conference proceedings
- Mar. 2012, PHYSICAL REVIEW LETTERS, 108(13) (13), 138102, English[Refereed]Scientific journal
- Feb. 2012, Journal of Biomechanical Science and Engineering, 7(1) (1), 57 - 71, English[Refereed]Scientific journal
- Feb. 2012, Nano-Biomedical Engineering, Imperial College Press, 134 - 143, EnglishRadial dispersion of tracer particles through high-hematocrit blood flow within a capillary tubeResearch society
- Feb. 2012, BIOMEDICAL MICRODEVICES, 14(1) (1), 25 - 33, English[Refereed]Scientific journal
- Feb. 2012, Nano-Biomedical Engineering, Imperial College Press, 70 - 76, EnglishEntrapment of fresh water ciliates at the interface fluid-airResearch society
- Feb. 2012, Nano-Biomedical Engineering, Imperial College Press, 53 - 62, EnglishComputational biomechanics of blood flow at macro- and micro-scalesResearch society
- Feb. 2012, Nano-Biomedical Engineering, Imperial College Press, 122 - 127, EnglishBehavior of a spherical capsule in simple shear flow near an infinite planeResearch society
- Bentham Science Publishers Ltd., 2012, Single and Two-Phase Flows on Chemical and Biomedical Engineering, 600 - 612, English[Refereed]In book
- Bentham Science Publishers Ltd., 2012, Single and Two-Phase Flows on Chemical and Biomedical Engineering, 513 - 547, English[Refereed]In book
- 2012, WIT Transactions on Modelling and Simulation, 53, 201 - 208, English[Refereed]International conference proceedings
- 2012, WIT Transactions on Modelling and Simulation, 53, 191 - 199[Refereed]International conference proceedings
- 2012, COMPUTATIONAL VISION AND MEDICAL IMAGE PROCESSING: VIPIMAGE 2011, 209 - 211, EnglishFlow visualization of trace particles and Red Blood Cells in a microchannel with a diverging and converging bifurcation[Refereed]International conference proceedings
- The Japan Society of Mechanical Engineers, 2012, The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2012(0) (0), _8F25 - 1_-_8F25-2_, Japanese[Refereed]International conference proceedings
- The Japan Society of Mechanical Engineers, 2012, The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2012(0) (0), _7E41 - 1_-_7E41-2_, JapaneseInternational conference proceedings
- 2012, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE, PTS A AND B, CD-ROM, 839 - 840, English[Refereed]International conference proceedings
- 2012, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE, PTS A AND B, CD-ROM, 777 - 778, English[Refereed]International conference proceedings
- 2012, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE, PTS A AND B, CD-ROM, 823 - 824, English[Refereed]International conference proceedings
- 2012, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE, PTS A AND B, CD-ROM, 787 - 788, English[Refereed]International conference proceedings
- 2012, BOUNDARY ELEMENTS AND OTHER MESH REDUCTION METHODS XXXIV, 53, 201 - 208, English[Refereed]International conference proceedings
- 2012, BOUNDARY ELEMENTS AND OTHER MESH REDUCTION METHODS XXXIV, 53, 191 - 199, English[Refereed]International conference proceedings
- 2012, COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING, 15(7) (7), 771 - 778, English[Refereed]Scientific journal
- 2012, LAB ON A CHIP, 12(21) (21), 4336 - 4343, English[Refereed]Scientific journal
- Dec. 2011, 5th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 72 - 73, EnglishMulti-GPU computing of capsule flow using boundary integral methodInternational conference proceedings
- Dec. 2011, 5th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 152 - 153, EnglishGPU-based simulation of blood flow in complex microvesselsInternational conference proceedings
- Dec. 2011, 5th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 120 - 121, EnglishEntrapment of fresh water ciliates at the interface fluid-airInternational conference proceedings
- Dec. 2011, 5th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 76 - 77, EnglishComputation of near-wall capsule flow using boundary integral methodInternational conference proceedings
- Dec. 2011, 5th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 32 - 33, EnglishCollective diffusion of red blood cells from high concentration to lowInternational conference proceedings
- Dec. 2011, BIOMICROFLUIDICS, 5(4) (4), 044120, English[Refereed]Scientific journal
- Dec. 2011, 5th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 150 - 151, EnglishA numerical computation on gastric mixing using GPUInternational conference proceedings
- Dec. 2011, 5th East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 34 - 35, EnglishAnalysis of fluid flow on the surface of tracheal lumen through effective ciliary motionInternational conference proceedings
- Nov. 2011, Bulletin of the American Physical Society, DFD2011, 56, 388, EnglishEnergy transport in a concentrated suspension of bacteriaInternational conference proceedings
- Nov. 2011, 5th Shanghai Int. Conf. Biophysics and Molecular Biology Abstract Book, 125, EnglishDevelopment of GPU computing for simulating dense suspension of capsulesInternational conference proceedings
- Sep. 2011, The International Conference on BioTribology Conference Abstracts, CD-ROM, EnglishSwallowing simulation based on videofluorographyInternational conference proceedings
- Sep. 2011, Proc. ECCOMAS SIMBIO 2011, CD-ROM, EnglishModelling of red blood cell motion and deformation using particle based methodInternational conference proceedings
- Aug. 2011, 3rd Micro and Nano Flows Conference, CD-ROM, EnglishParticle based modeling and simulation of the red blood cell infected by malaria -mechanism of the margination of the infected red blood cellInternational conference proceedings
- Jul. 2011, PHYSICAL REVIEW LETTERS, 107(2) (2), 028102, English[Refereed]Scientific journal
- Jun. 2011, JOURNAL OF THEORETICAL BIOLOGY, 279(1) (1), 63 - 73, English[Refereed]Scientific journal
- Jun. 2011, Proc Japan-Portugal Nano-BME Symp, 7 - 10, EnglishNumerical simulation on margination of malaria-infected red blood cells in microvesselsInternational conference proceedings
- Jun. 2011, Proc. Japan-Portugal Nano-BME Symp, 15 - 16, EnglishNumerical simulation of cell depleted peripheral layer and red blood cells motion in microvascular blood flowInternational conference proceedings
- Jun. 2011, Proc. Japan-Portugal Nano-BME Symp, 29 - 30, EnglishMotions of trace particles and red blood cells in a PDMS microchannel with a converging bifurcationInternational conference proceedings
- Jun. 2011, Proc. Japan-Portugal Nano-BME Symp, 19 - 22, EnglishHigh performance GPU computing of capsule flow using boundary integral methodInternational conference proceedings
- Jun. 2011, Proc. Japan-Portugal Nano-BME Symp, 17 - 18, EnglishGradient diffusion of red blood cells in a Y-shape microchannelInternational conference proceedings
- Jun. 2011, Proc. Japan-Portugal Nano-BME Symp, 49 - 50, EnglishDevelopment of a microfluidic device for partial cell separationInternational conference proceedings
- Jun. 2011, Proc Japan-Portugal Nano-BME Symp, 1 - 4, EnglishComputational biomechanics for respiratory and micro-circulation systemsInternational conference proceedings
- Jun. 2011, Proc. Japan-Portugal Nano-BME Symp, 11 - 14, EnglishAnalysis of ciliary motion and fluid flow on the surface of tracheal cellsInternational conference proceedings
- May 2011, Microscale Modeling in Biomechanics and Mechanobiology Program and Abstract, EnglishComputational analysis of the margination of malaria-infected red blood cells in microcirculationInternational conference proceedings
- May 2011, Microscale Modeling in Biomechanics and Mechanobiology Program and Abstract, EnglishEffect of red blood cells on dynamics of microvascular blood flowInternational conference proceedings
- May 2011, Microscale Modeling in Biomechanics and Mechanobiology Program and Abstract, EnglishCapsule flow analysis using GPU computationInternational conference proceedings
- May 2011, Microscale Modeling in Biomechanics and Mechanobiology Program and Abstract, EnglishDiffusion of red blood cells from high concentration to low in a blood flow microchannelInternational conference proceedings
- May 2011, JOURNAL OF BIOMECHANICS, 44(8) (8), 1553 - 1558, English[Refereed]Scientific journal
- Apr. 2011, PHYSICAL REVIEW E, 83(4) (4), 041918, English[Refereed]Scientific journal
- Mar. 2011, 16th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 99 - 102, EnglishNovel methods for the computational biomechanics study of respiratory and micro-circulatory systemsInternational conference proceedings
- Mar. 2011, INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, 27(3) (3), 424 - 435, English[Refereed]Scientific journal
- Feb. 2011, BIOMEDICAL MICRODEVICES, 13(1) (1), 159 - 167, English[Refereed]Scientific journal
- 2011, Trends & Challenges in Computational Mechanics Program and Abstracts, 43 - 44, EnglishParticle based simulation of the microvascular blood flow in the malaria infectionInternational conference proceedings
- 2011, COMPUTATIONAL VISION AND MEDICAL IMAGE PROCESSING: RECENT TRENDS, 19, 297 - 309, EnglishInternational conference proceedings
- Jan. 2011, JOURNAL OF BIOMECHANICS, 44(1) (1), 170 - 175, English[Refereed]Scientific journal
- 2011, ASME 2011 6th Frontiers in Biomedical Devices Conference and Exhibition, BioMed 2011, CD-ROM, 25 - 26, English[Refereed]International conference proceedings
- 2011, ASME 2011 6th Frontiers in Biomedical Devices Conference and Exhibition, BioMed 2011, CD-ROM, 13 - 14, English[Refereed]International conference proceedings
- We investigated the gradient diffusion of red blood cells (RBCs) in blood flow in a microchannel. The effects of flow rates, and hematocrit (Hct) on the gradient diffusion were investigated experimentally. Under the same hematocrit condition, the gradient dispersion coefficient was increased almost linearly to the flow rate. The gradient diffusion dominated over Brownian diffusion in most of high hematocrit conditions. These findings provide useful information in understanding mass transport in small vessels.The Japan Society of Mechanical Engineers, 2011, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2011(0) (0), 63 - 64, EnglishResearch society
- Dec. 2010, Proc. 4th East Asian Pacific Stu. Workshop Nano-Biomed. Eng, 98 - 99, EnglishLarge-scale numerical simulation of blood flow in microvesselsInternational conference proceedings
- Nov. 2010, JOURNAL OF INTERPROFESSIONAL CARE, 24(6) (6), 738 - 741, English[Refereed]Scientific journal
- Sep. 2010, KIST-Tohoku Joint Symp Nanobiomed Eng, 75 - 76, EnglishSeparation of cancer cells from blood by using a micro fluidic deviceInternational conference proceedings
- Sep. 2010, KIST-Tohoku Joint Symp Nanobiomed Eng, 67 - 68, EnglishEffects of rosette formation and cytoadhesion on hemodynamics in malaria infectionInternational conference proceedings
- Sep. 2010, KIST-Tohoku Joint Symp Nanobiomed Eng, 15 - 16, EnglishA numerical study on migration of malaria infected red blood cells[Refereed][Invited]International conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 581, EnglishParallel 3-D Code to Investigate the Pathophysiology of Malaria on Distributed Memory SystemsInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 561, EnglishMicro-flow Visualization of in vitro Blood through a Microchannel with a Bifurcation and ConfluenceInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 472, EnglishMeasuring the Cell-Free Layer in circular MicrochannelsInternational conference proceedings
- Aug. 2010, IFMBE Proceedings, 31, 1067 - 1070, EnglishMeasurement of the red blood cell (RBC) dispersion in microchannels: the effect of the temperatureInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 470, EnglishEffect of Membrane Modeling on the Capsule Deformation: Comparison between a Spring Network and Continuum ModelsInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 503, EnglishEffect of Adhesive Properties of Malaria-infected Red Blood Cells in MicrocirculationInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 471, EnglishDiffusion of Fluid Particles in High Hematocrit Blood Flow in a Capillary TubeInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 164, EnglishDevelopment of a Micro Fluidic Device to Separate Cancer Cells from BloodInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 471, EnglishA Numerical Study on the Behavior of Cells in Micro-scale Blood FlowsInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 575, EnglishA Numerical Study on Fluid Motion in the StomachInternational conference proceedings
- Aug. 2010, 6th World Congress of Biomechanics Abstracts, 165, EnglishAnalysis of Swallowing Motion based on VideofluorographyInternational conference proceedings
- Jul. 2010, ESB2010 Abstracts CD-ROM, EnglishBlood flow and cancer cell adhesion in a microchannel with bifurcation and confluenceInternational conference proceedings
- Jun. 2010, CFD2010 Proceedings (CD-ROM), EnglishConfocal micro-flow visualization of blood cellsInternational conference proceedings
- May 2010, 22nd International Conference on Parallel Computational Fluid Dynamics (ParCFD 2010) (CD-ROM), EnglishEfficient parallel code for simulating malaria infected blood flowInternational conference proceedings
- May 2010, Proc. 4th ECCM, CD-ROM, No.269, EnglishNumerical simulation of interaction among malaria-infected red blood cells, healthy red blood cells, and endothelial cells[Refereed][Invited]International conference proceedings
- May 2010, JOURNAL OF BIOMECHANICS, 43(7) (7), 1386 - 1393, English[Refereed]Scientific journal
- May 2010, Proc. 4th ECCM, No. 781, EnglishImpact of membrane modeling in analysing deformation of a capsule:comparison between a spring network model and constitutive laws[Refereed]International conference proceedings
- May 2010, ONCOLOGY REPORTS, 23(5) (5), 1425 - 1433, English[Refereed]Scientific journal
- Mar. 2010, 11th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 103 - 104, EnglishEffect of pneumothorax on morphology and hemodynamic of pulmonary arteryInternational conference proceedings
- Mar. 2010, 11th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 113 - 114, EnglishRadial dispersion of tracer particles in blood flow in a capillary tubeInternational conference proceedings
- Mar. 2010, The 2nd Biosupercomputing symposium, 118 - 119, EnglishComprehensive application of particle methods to the diseases of the bloodInternational conference proceedings
- Mar. 2010, ANNALS OF BIOMEDICAL ENGINEERING, 38(3) (3), 1225 - 1235, English[Refereed]Scientific journal
- Mar. 2010, ANNALS OF BIOMEDICAL ENGINEERING, 38(3) (3), 927 - 934, English[Refereed]Scientific journal
- Feb. 2010, Nano-Biomedical Engineering 2009, 41 - 50, EnglishComputational biomechanics for investigating cardiovascular diseases
- The Japan Society of Mechanical Engineers, 2010, The proceedings of the JSME annual meeting, 2010, 51 - 52, Japanese
- 2010, 6TH WORLD CONGRESS OF BIOMECHANICS (WCB 2010), PTS 1-3, 31, 1067 - +, EnglishRed Blood Cell Dispersion in 100 mu m Glass Capillaries: The Temperature Effect[Refereed]International conference proceedings
- 2010, AIP Conference Proceedings, 1281, 591 - 593, EnglishInternational conference proceedings
- Jan. 2010, SMART-Tohoku GCOE joint Workshop on Micro & Nano Bioenginering, 50 - 50, EnglishCellular behaviours in high hematocrit blood flow in micro-channelsInternational conference proceedings
- 2010, 6TH WORLD CONGRESS OF BIOMECHANICS (WCB 2010), PTS 1-3, 31, 1145 - +, EnglishInternational conference proceedings
- 2010, Journal of Biomechanical Science and Engineering, 5(5) (5), 485 - 498, English[Refereed]Scientific journal
- (株)医学書院, Dec. 2009, 呼吸と循環, 57(12) (12), 1219 - 1227, Japanese
- Dec. 2009, 3rd East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 124 - 125, EnglishPatient specific morphological and hemodynamic analysis of pulmonary artery in the case of severe deformations of the lungInternational conference proceedings
- Dec. 2009, 3rd East Asian Pacific Student Workshop on Nano-Biomedical Engineering, 122 - 123, EnglishImpact of membrane modeling on the deformation analysis of a capsuleInternational conference proceedings
- Dec. 2009, INTERNATIONAL JOURNAL OF MEDICAL ROBOTICS AND COMPUTER ASSISTED SURGERY, 5(4) (4), 471 - 478, English[Refereed]Scientific journal
- Nov. 2009, Dynein International Workshop 2009, p.11, EnglishFluid flow analysis of the surface of tracheal ciliary cells
- Nov. 2009, International Journal of Computational Fluid Dynamics, 23, 583 - 593, English[Refereed]Scientific journal
- Nov. 2009, VIPIMAGE2009, Computational Vision and Medical Image Processing, 335 - 338, EnglishPatient-specific blood flow analysis of pulmonary artery affected by severe deformations of the lung[Refereed]International conference proceedings
- Nov. 2009, VIPIMAGE2009, Computational Vision and Medical Image Processing, 339 - 342, EnglishMotions of particles and red blood cells in a bifurcation: comparison between experiments and numerical simulations[Refereed]International conference proceedings
- Nov. 2009, VIPIMAGE2009, Computational Vision and Medical Image Processing, 357 - 360, EnglishDetermination of the cell-free layer in circular PDMS microchannels[Refereed]International conference proceedings
- Sep. 2009, Book of Abstracts BIOENGINEERING 09, 48 - 48, EnglishSimulation of rosette formation and destruction of malaria infected red blood cellsInternational conference proceedings
- Sep. 2009, Book of Abstracts BIOENGINEERING 09, 92 - 92, EnglishPulmonary airflow simulation of inspiration and expiration using a patient-specific modelInternational conference proceedings
- Sep. 2009, Book of Abstracts BIOENGINEERING 09, 126 - 126, EnglishOn the sensitivity of a hemodynamic index for cerebral aneurysm initiation, the GON, to flow input waveformInternational conference proceedings
- Sep. 2009, Proc. 3rd Switzerland-Japan Workshop on Biomechanics 2009, 47 - 47, EnglishMixing of red blood cells in high hematocrit blood flow in micro-channelsInternational conference proceedings
- Aug. 2009, ANNALS OF BIOMEDICAL ENGINEERING, 37(8) (8), 1546 - 1559, English[Refereed]Scientific journal
- Jul. 2009, 10th U.S. National Congress on Computational Mechanics Congress Program, 42 - 42, EnglishA particle based modeling and analysis of Malaria infected red blood cell in microcirculationInternational conference proceedings
- Jul. 2009, 36th International Congress of Physiological Sciences Final Program, 143 - 143, EnglishComputational biomechanics of malaria and arterial diseasesInternational conference proceedings
- Jul. 2009, Technology and Health Care, 17, 121 - 131, English[Refereed]Scientific journal
- Jun. 2009, ADVANCES IN PHYSIOLOGY EDUCATION, 33(2) (2), 91 - 97, English[Refereed]Scientific journal
- May 2009, JOURNAL OF BIOMECHANICS, 42(7) (7), 838 - 843, English[Refereed]Scientific journal
- Apr. 2009, 10th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network CentreNano-Biomedical Engineering in the East Asian-Pacific Rim Region Jointly Organised with Fourth Asian Pacific Conf, 20 - 21, EnglishNumerical simulation of inspiratory and expiratory pulmonary airflow using a patient-specific modelInternational conference proceedings
- Apr. 2009, 10th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network CentreNano-Biomedical Engineering in the East Asian-Pacific Rim Region Jointly Organised with Fourth Asian Pacific Conf, 8 - 9, EnglishEffect of the memberane bending stiffeness on the deformation of a red blood cellInternational conference proceedings
- Apr. 2009, 15th Int. Conf. Finite Elements in Flow Problems (FEF09) Abstracts, 37, EnglishPatient-specific pulmonary airflow simulation using cartestian adaptive mesh refinement methodInternational conference proceedings
- Apr. 2009, Proc. AP Biomech 2009, 164 - 165, EnglishNumerical simulation of inpiratory and expiratory pulmonary airflow using a patient-specific modelInternational conference proceedings
- Apr. 2009, Proc. AP Biomech 2009, 102 - 103, EnglishMotion of individual red blood cells in a concentrated suspension flowing through micro-channelsInternational conference proceedings
- Apr. 2009, Proc. ICCES'09, 244, EnglishMotion of individual cells in high hematocrit blood flow in micro-channelsInternational conference proceedings
- Apr. 2009, 15th Int. Conf. Finite Elements in Flow Problems (FEF09) Abstracts, 41, EnglishModeling of the membrane bending rigidity for calculating red blood cell deformationInternational conference proceedings
- Apr. 2009, Proc. AP Biomech 2009, 154 - 155, EnglishLow voltage pulses can induce apoptosisInternational conference proceedings
- Apr. 2009, ANNALS OF BIOMEDICAL ENGINEERING, 37(4) (4), 702 - 709, English[Refereed]Scientific journal
- Apr. 2009, Proc. AP Biomech, 196 - 197, EnglishEffect of the membrane bending stiffness on the deformation of a red blood cellInternational conference proceedings
- Apr. 2009, Proc. ICCES'09, 10, EnglishComputational biomechanics for investigating various diseases over micro to macro scales[Invited]International conference proceedings
- Apr. 2009, Proc. ICCES'09, 96, EnglishA numerical model to study hemodynamics arising from malaria infection[Invited]International conference proceedings
- Apr. 2009, Proc. AP Biomech 2009, 100 - 101, EnglishA micro scale blood flow model to study pathology of malariaInternational conference proceedings
- Mar. 2009, 9th International Symposium of Tohoku University Global COE Program, Global Nano-Biomedical Engineering Education and Research Network Centre, Nano-Biomedical Engineering in the East Asian-Pacific Rim Region, 100 - 101, EnglishComputational simulation of blood flow in pulmonary artery under respiratory disordersInternational conference proceedings
- Mar. 2009, JOURNAL OF BIOMECHANICS, 42(4) (4), 550 - 554, English[Refereed]Scientific journal
- 2009, IFMBE Proceedings, 23, 2244 - 2247, English[Refereed]International conference proceedings
- 2009, ICCB 2009, USB, 83, EnglishSimulation of microcirculatory disorder by malaria infection using a particle methodInternational conference proceedings
- 2009, Med. Phys. Biomed. Eng. World Cong. 2009, CD-ROM, 131, EnglishParticle method simulation of red blood cells infected by malariaInternational conference proceedings
- 2009, MODELLING IN MEDICINE AND BIOLOGY VIII, 13, 49 - +, EnglishInternational conference proceedings
- 2009, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE - 2009, PT A AND B, CD-ROM, 765 - 766, English[Refereed]International conference proceedings
- 2009, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE - 2009, PT A AND B, CD-ROM, 1037 - 1038, English[Refereed]International conference proceedings
- 2009, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE - 2009, PT A AND B, CD-ROM, 443 - 444, English[Refereed]International conference proceedings
- 2009, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE - 2009, PT A AND B, CD-ROM, 479 - 480, English[Refereed]International conference proceedings
- 2009, PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE - 2009, PT A AND B, CD-ROM, 331 - 332, English[Refereed]International conference proceedings
- 2009, Technology and Health Care, 17(2) (2), 121 - 131, English[Refereed]Scientific journal
- 2009, INTERNATIONAL JOURNAL OF COMPUTATIONAL FLUID DYNAMICS, 23(8) (8), 583 - 593, English[Refereed]Scientific journal
- Dec. 2008, GPBE/NUS-Tohoku Graduate Student Conf. Bioeng., Program & Abstract, 99 - 100, EnglishBehavior of a red blood cell in a simple shear flow simulated by a boundary element method
- Dec. 2008, GPBE/NUS-Tohoku Graduate Student Conf. Bioeng., Program & Abstract, 95 - 96, EnglishA novel hemodynamic index for the initiation of cerebral aneurysms: focusing on temporal variation of spatial wall shear stress gradient
- Dec. 2008, GPBE/NUS-Tohoku Graduate Student Conf. Bioeng., Program & Abstract, 81 - 82, EnglishNumerical simulation of inspiratory and expiratory pulmonary airflow using a subject-specific model
- Nov. 2008, Int. Feder. Med. Biol. Eng. (IFMBE) Proc. (CD-ROM), 205, English
- Nov. 2008, Int. Feder. Med. Biol. Eng. (IFMBE) Proc. (CD-ROM), 234, English
- Nov. 2008, Int. Feder. Med. Biol. Eng. (IFMBE) Proc. (CD-ROM), 274, English
- Nov. 2008, TELEMEDICINE JOURNAL AND E-HEALTH, 14(9) (9), 939 - 945, English[Refereed]Scientific journal
- Oct. 2008, Interntional Symposium on Nano-Biomedical Engineering7th Intrnational Symposium of 2007 Tohoku University Global COE Program "Global Nano-Biomedical Engineering Education and Research Network Centre"Nano-Biomedical Engineering in the East Asian-Pacific Ri, 42 - 43, EnglishThree-dimensional simulation of malaria-infected bloodInternational conference proceedings
- Sep. 2008, Book of Abstracts BIOENGINEERING 08, 135 - 135, EnglishBehavior of a red blood cell in a simple shear flow simulated by a boundary element methodInternational conference proceedings
- Sep. 2008, Bioengineering 08 Book of Abstracts, 61, EnglishMixing of red blood cells in a micro-channel flow under high hematocrit conditions
- Sep. 2008, Bioengineering 08 Book of Abstracts, 166, EnglishConfocal micro-PTV Measurements of Blood Flow in a Circular PDMS Microchannel
- Sep. 2008, Bioengineering 08 Book of Abstracts, 146, EnglishProposal of a New Hemodynamic Index for Cerebral Aneurysm Initiation: Focusing on Temporal Fluctuation of Spatial Wall Shear Stress Gradient
- Sep. 2008, CANCER LETTERS, 269(1) (1), 93 - 100, English[Refereed]Scientific journal
- Sep. 2008, ANNALS OF BIOMEDICAL ENGINEERING, 36(9) (9), 1489 - 1495, English[Refereed]Scientific journal
- Sep. 2008, Abstracts of Bioengineering 08, EnglishA numerical method for simulating micro-scale blood flow in malaria infection[Refereed]International conference proceedings
- Jul. 2008, 8th World Congress on Computational Mechanics (WCCM8) / 5th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS 2008) (PROGRAMME, CD-ROM), 216 - 216, EnglishImage-based pulmonary airflow simulation using cartesian adaptive mesh refinement method[Refereed]International conference proceedings
- Jul. 2008, ・16th Congress of the European Society of Biomechanics Conference Program ・Abstract 16th Congress of the European Society of Biomechanics (CD-ROM), 30 - 30, EnglishRole of the hematocrit on the radial dispresion of red blood cells in glass capillariesInternational conference proceedings
- Jul. 2008, IACM/ECCOMAS Congress 2008 CD-ROM, MS194C, EnglishThree-Dimensional Simulation of Blood Flow arising from Malaria Infection
- Jul. 2008, Journal of Biomechanics, 41, S390, EnglishMotion of red blood cells and cell free layer distribution in a stenosed microchannelInternational conference proceedings
- Jul. 2008, Journal of Biomechanics, 41, S429, EnglishDetermination of blood cells motions and interactions by a confocal micro-PTV systemInternational conference proceedings
- Jul. 2008, Journal of Biomechanics, 41, S480, EnglishA numerical model of blood flow with malariainfected red blood cellsInternational conference proceedings
- Jul. 2008, MEDICAL ENGINEERING & PHYSICS, 30(6) (6), 774 - 782, English[Refereed]Scientific journal
- Jul. 2008, JOURNAL OF BIOMECHANICS, 41(10) (10), 2188 - 2196, English[Refereed]Scientific journal
- Jun. 2008, Int. Symp. Multi-scale Sim. Biol. Soft Mater. (MSBSM2008) Book of Abstracts, 2 - 3, EnglishMulti-scale multi-physics simulations of Biological flows
- Jun. 2008, Proc. ASME 2008 Summer Bioeng. Conf.CD-ROM, EnglishThe importance of proliferation of the arterial wall in formation of saccular cerebral aneurysms
- May 2008, Proc. Tohoku-NUS Student Joint Symp, 16 - 17, EnglishPulmonary airflow simulation using subject-specific model and Cartesian adaptive mesh refinement method
- Apr. 2008, BIOMEDICAL MICRODEVICES, 10(2) (2), 153 - 167, English[Refereed]Scientific journal
- Mar. 2008, Fifth International Bio-Fluid Symposium and Workshop, 146 - 147, EnglishCT image-based pulmonary airflow simulation using airway scale determined mesh
- Mar. 2008, Fifth International Bio-Fluid Symposium and Workshop, 65 - 66, EnglishSome uninvestigated directions of computational fluid dynamics studies for flow
- Feb. 2008, JOURNAL OF COMPUTATIONAL PHYSICS, 227(4) (4), 2263 - 2285, English[Refereed]Scientific journal
- We proposed a new hemodynamic indicator for the initiation of cerebral aneurysms, defined by the temporal fluctuations of tension/compression forces acting on endothelial cells. We calculated the proposed hemodynamic indicator and other three hemodynamic quantities (time-averaged wall shear stress (WSS), time-averaged spatial WSS gradient (SWSSG), and potential aneurysm formation indicator (AFI)) for a patient-specific geometry before aneurysm formation by means of computational fluid dynamics technique. The results showed that only the proposed hemodynamic indicator had a significant correlation with the location of aneurysm formation. Our findings suggest that the proposed indicator might be a prospective hemodynamic indicator for the initiation of cerebral aneurysms.The Japan Society of Mechanical Engineers, 2008, The proceedings of the JSME annual meeting, 2008, 31 - 32, Japanese
- We have numerically analyzed inspiratory and expiratory airflow using an image-based pulmonary airway model. As a result, the image-based analysis provided us with some interesting flow features, which is hardly seen in analyses using idealistic airway models. We have examined relationship between flow rate at trachea and pressure drop between trachea and peripheral airways during inspiraotry and expiratory phase. There was difference of pressure drop between inspiratory and expiratory phase even the flow rate was identical, though pressure loss due to fluid viscosity in inspiratory and expiratory phase was almost identical. Generally, pressure drop in a tube is given from summation of dynamic pressure and pressure loss due to fluid viscosity. We conclude that the difference of pressure drop was occurred due to dynamic pressure caused by the difference of cross sectional area between trachea and peripheral airways.The Japan Society of Mechanical Engineers, 2008, The proceedings of the JSME annual meeting, 2008, 121 - 122, Japanese
- A capsule endoscope is recently developed for the observation of the digestive system because digestive diseases particularly cancers very frequently occur and became fatal. Despite many advantages, the capsule endoscope has some limitations in the diagnosis, since it only moves passively by the peristaltic motion of the intestine. In order to overcome this problem, locomotive functions are expected to the capsule endoscope. In this study, we report a mechanical crawler system mimicking the pedal locomotion of snails for such a capsule endoscope. The crawler we developed has four joints, five segments and two suction cups. In locomotion experiments on a horizontal plane and on an inclined plane of 10 degrees, we confirmed that the developed crawler could locomote at the speed of 3 mm/s.The Japan Society of Mechanical Engineers, 2008, The proceedings of the JSME annual meeting, 2008, 59 - 60, Japanese
- 2008, COMPUTATIONAL VISION AND MEDICAL IMAGING PROCESSING, 53 - +, EnglishMicroscale flow dynamics of red blood cells in a circular microchannel[Refereed]International conference proceedings
- 2008, Journal of Biomechanical Science and Engineering, 3(3) (3), 431 - 442, English[Refereed]Scientific journal
- Dec. 2007, Proc. 7th Int. Symp. Adv. Fluid Info. & 4th Int. Symp. Transdisciplinary Fluid Integr., 56 - 57, EnglishTracking of red blood cells in microchannel with stenosis by confocal micro PTV system[Refereed]
- Dec. 2007, Proc. 3rd Tohoku-NUS Joint Symp. Nano-Biomed. Eng. in the East Asian-Pacific Rim Region, 99 - 100, EnglishBlood flow in microchannel with stenosis measured by a confocal micro PTV system[Refereed]
- Dec. 2007, Proc. 3rd Tohoku-NUS Joint Symp. Nano-Biomed. Eng. in the East Asian-Pacific Rim Region, 47 - 48, EnglishDevelopment of respiration measurement system with conductive rubber for elderly home care[Refereed]
- Dec. 2007, Proc. APCOM'07 in conjunction with EPMESC XI, CD-ROM MS22-4-2, EnglishModeling of malaria-infected red blood cell mechanics using a particle method[Refereed]
- Dec. 2007, Proc. APCOM'07 in conjunction with EPMESC XI, CD-ROM MS22-3-3, EnglishNumerical simulation of cerebral aneurysm growth based on a hemodynamic hypothesis[Refereed]
- Dec. 2007, Proc. APCOM'07 in conjunction with EPMESC XI, CD-ROM MS7-1-3, EnglishAn AMR Method based on the IDO scheme for patient-specific pulmonary airflow simulation[Refereed]
- Dec. 2007, TELEMEDICINE JOURNAL AND E-HEALTH, 13(6) (6), 703 - 713, English[Refereed]Scientific journal
- Nov. 2007, Proc. Int. Conf. Adaptive Modeling & Simulation, 166 - 169, EnglishCT Image-Based Respiratory Flow Simulation by using Cartesian Adaptive Mesh Refinement Method[Refereed]
- Nov. 2007, Proc. Int. Conf. Adaptive Modeling & Simulation, 128 - 131, EnglishA Cartesian Adaptive Mesh Refinement Method for Simulating Physiological Flows[Refereed]
- Nov. 2007, Bulletin of the American Physical Society, 52, 245 - 246, EnglishThe hydrodynamics of interactions between two swimming bacteria[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S226, EnglishNumerical Simulation of Malaria-Infected Blood Flow using a Particle Method[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S206, EnglishMeasurement of Respiration by a Hyper Diaper with Conductive Rubber[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S103, EnglishMonitoring Physical and Mental Workloads by a Wearable Computer[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S92, EnglishMeasurement of Multi-Red Blood Cells Interactions in Blood Flow by Confocal Micro-PTV[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S89, EnglishObservation of the Blood Flow in Microchannel with Stenosis by Confocal-Micro-PIV[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S84, EnglishDevelopment of a Wearable System for Monitoring Health Condition[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S76, EnglishA Simulation Model for Cerebral Aneurysm Growth based on a Hemodynamic Hypothesis[Refereed]
- Nov. 2007, Proc. 3rd Asian Pacific Conf. Biomech., S58, EnglishCFD Study on Mass Transport to Saccular Aneurysms at Arterial Bend[Refereed]
- Oct. 2007, Proc. 4th Japan-Taiwan Workshop on Mech. & Aerospace Eng., 289 - 294, EnglishCFD modeling of pulmonary airflow using IDO-AMR method[Refereed]
- Sep. 2007, BIOPHYSICAL JOURNAL, 93(6) (6), 2217 - 2225, English[Refereed]Scientific journal
- Jun. 2007, Biomechanics at micro- and nanoscale levels, World Scientific, 3, 146 - 156, EnglishA fluid-solid interactions study of the pulse wave velocity in uniform arteries[Refereed]
- Jun. 2007, Proc. 2007 Summer Bioengineering Conference, CD-ROM, 175969, EnglishMeasurement of erythrocyte motions in microchannels by using a confocal micro-PTV system
- Jun. 2007, Proc. 2007 Summer Bioengineering Conference, CD-ROM, 176102, EnglishWall shear stress change due to arterial wall stiffness; fluid-solid interaction study
- Jun. 2007, Proc. 2007 Summer Bioengineering Conference, CD-ROM, 176529, EnglishImage-based simulation of pulmonary airflow using multi-level voxel modeling
- Jun. 2007, Proc. 2007 Summer Bioengineering Conference, CD-ROM, 176106, EnglishA simulation study on the growth of cerebral aneurysms
- Jun. 2007, Proc. 2007 Summer Bioengineering Conference, CD-ROM, 176556, EnglishEffects of arterial geometry on inflow rate into cerebral aneurysms on curved arteries
- The distribution of wall shear stress (WSS) in arteries is affected by both blood and wall motion. Most studies have ignored wall motion by assuming that the artery wall is rigid. To investigate the influence of wall motion we have solved the coupled fluid-solid problem in a straight homogeneous tube. The inlet boundary condition of the tube was given as a pulse of velocity imposed at the inlet of the tube upon a steady flow of Reynolds number 1000. A commercial code (Radioss, Altair Engineering) was used to solve the fluid-solid interactions. Two kinds of waves are generated on the wall by the pulse imposed in the inlet flow; a wave of longitudinal motion of the wall (the longitudinal wave) and a wave of radial motion of the wall (the elastic wave). The ends of the vessel are assumed to be fixed which results in the reflection of both waves. The longitudinal wall motion reduces the relative speed of the blood, reducing WSS by up to 0.5 Pa. The largest effect of wall motion occurs when the longitudinal and elastic waves coincide, where the peak WSS is reduced by 1.0 Pa, which is a significant fraction of the observed WSS. Thus we can say that the effect of wall motion is important in considering physiological response of arterial wall to the blood flow.The Japan Society of Mechanical Engineers, May 2007, Journal of Biomechanical Science and Engineering, 2(2) (2), 58 - 68, English[Refereed]Scientific journal
- Mar. 2007, JOURNAL OF APPLIED METEOROLOGY AND CLIMATOLOGY, 46(3) (3), 388 - 395, English[Refereed]Scientific journal
- (一社)呼吸研究, Feb. 2007, 呼吸, 26(2Suppl.) (2Suppl.), S7 - S10, Japanese64チャンネルマルチスライスCTを用いた肺気道形態の計測
- Jan. 2007, Proc. Final Symp. Tohoku University 21st Century of Excellence Program, 919 - 927, EnglishA Fluid-Solid Interaction Study of the Pulse Wave Velocity in Uniform Arteries[Refereed]
- We have developed a new method for respiratory computational fluid dynamics (CFD) simulation using realistic airway models extracted from multi-slice computed tomography (CT) images. Pulmonary airway is multi-scale tube, which is one of the difficulties in respiratory simulation. In the viewpoint of CFD, mesh size must be refined to capture airflow in the small airways. Therefore adaptive mesh refinement (AMR) method based on Interpolated Differential Operator (IDO) scheme is applied to respiratory simulation model. Mesh size is determined by the diameter of the airways in the local domain to maintain accuracy for CFD simulation and adjust computational time. As a result of CFD analysis, we have confirmed accuracy of our new AMR adopted airflow simulation in spite of the number of computational nodes decreased 75%.The Japan Society of Mechanical Engineers, 2007, The proceedings of the JSME annual meeting, 2007, 271 - 272, Japanese
- To solve an aging problem in the society, it is important that the aged people are encouraged to be independent and spend healthy life. We have proposed the concept of the Hyper Hospital, which is the information support system for patients. In the Hyper Hospital, some units analyze their vital data, and patient's family who lives in the distance, the neighborhood and their doctor share the analyzed data through computer network to know their health condition. In this paper, we present a wearable platform for monitoring health condition. This platform sends the analyzed biomedical signal of a patient to a database server in his/her house. We developed a sensor module to acquire EMG that informs weakening of muscular strength by an underexercise or disease such as a hemiplegia. We confirmed that the sensor module works well with storage module and analysis module through some experiment. We also developed a database server for collecting data from any other sensor module and processing the data from each module separately. The proposed system will be expected monitoring health condition of the elderly.The Japan Society of Mechanical Engineers, 2007, The proceedings of the JSME annual meeting, 2007, 57 - 58, Japanese
- The mechanism of the growth of cerebral aneurysm has not yet been understood. We focus on biological reactions in addition to purely mechanical process. We propose a simulation model to express the assumption that surface areas of the arterial wall are increased locally where wall shear stress value is much higher. We applied the model to a U-shaped artery with torsion. The resultant shape was consistent with clinical observations. It is concluded that it is necessary to consider biological reactions to understand the growth of the cerebral aneurysm.The Japan Society of Mechanical Engineers, 2007, The proceedings of the JSME annual meeting, 2007, 91 - 92, Japanese
- This paper focuses on inflow into an aneurysm from its parent artery. Understandings of the inflow are required in designing endovascular devices such as coils and stents. A parametric computational fluid dynamics study of the inflow is performed for saccular cerebral aneurysms at a variety of arterial bends. Numerical results show that the inflow rate is strongly influenced by parent arterial geometry because secondary flow momentum in the parent artery determines the inflow. We also present that the shape of an aneurysm little affects the inflow rate.The Japan Society of Mechanical Engineers, 2007, The proceedings of the JSME annual meeting, 2007, 89 - 90, Japanese
- Malaria is one of the most serious diseases for all around the world. It is thought that severe symptoms are caused by microvasucular occlusions of parasitized red blood cells (PRBC) that have adhesive property and low deformability. However, the detailed mechanisms of the vascular occlusion caused by red blood cells are still not clear. In this study, the malaria-infected blood is modeled by particles. The adhesive property of PRBC is expressed by local spring. The result shows that the PRBC interacts with some healthy RBCs and move downstream keeping attachment to the vessel wall. This phenomenon induces the high resistance to the flow, which is likely to lead to microvascular obstruction in lower shear flow.The Japan Society of Mechanical Engineers, 2007, The proceedings of the JSME annual meeting, 2007, 87 - 88, Japanese
- World Scientific Publishing Co., Jan. 2007, Biomechanics at Micro- and Nanoscale Levels, 4, 130 - 140, English[Refereed]In book
- Jan. 2007, The 9th Int. Symp. Future Med. Eng. based on Bio-nanotech., 128 - 129, EnglishEffect of Aneurysmal Geometry on the Distribution of ATP Concentration[Refereed]
- Jan. 2007, The 9th Int. Symp. Future Med. Eng. based on Bio-nanotech., 126 - 127, EnglishTracking Red Blood Cells in a Circular PDMS Microchannel using a Confocal Micro-PIV System[Refereed]
- Jan. 2007, The 9th Int. Symp. Future Med. Eng. based on Bio-nanotech., 94 - 95, EnglishNumerical Simulation on the Growth of Saccular Aneurysm[Refereed]
- The blood flow in a large artery is commonly analyzed by means of constitutive equations. However, it is not appropriate to use these equations for small arteries because of the heterogeneity of the blood. In this study, we use a bead-spring model for an erythrocyte to simulate a low-hematocrit blood flow in a small artery with a stenosis. The flow field is solved using Euler coordinates, whereas the motion of the erythrocyte is solved using Lagrangian coordinates (two-way coupling). The results show that the erythrocytes are considerably deformed around the stenosis and that the separated region downstream of the stenosis is weakened by the erythrocytes.The Japan Society of Mechanical Engineers, Jan. 2007, Journal of Biomechanical Science and Engineering, 2(1) (1), 12 - 22, English[Refereed]Scientific journal
- Dec. 2006, Proc. 2nd Tohoku-NUS Joint Symp. Future Nano-med. Bioeng. in the East Asian Region as the 8th Int. Symp. Future Med. Eng. Based on Bio-nanotech., 120 - 121, EnglishDevelopment of a wearable watch over system for patients home with an accelerometer[Refereed]
- Dec. 2006, Proc. 2nd Tohoku-NUS Joint Symp. Future Nano-med. Bioeng. in the East Asian Region as the 8th Int. Symp. Future Med. Eng. Based on Bio-nanotech., 118 - 119, EnglishNumerical analysis of ATP transport in aneurysms[Refereed]
- Dec. 2006, Proc. 2nd Tohoku-NUS Joint Symp. Future Nano-med. Bioeng. in the East Asian Region as the 8th Int. Symp. Future Med. Eng. Based on Bio-nanotech., 122 - 123, EnglishMonitoring physical and mental workloads by wearable system for elderly home care[Refereed]
- Dec. 2006, Proc. 15th Int. Conf. Mechanics in Medicine and Biology, 187 - 188, EnglishDevelopment of a wearable system for an quantification measurment of human motions in daily life[Refereed]
- Dec. 2006, Proc. 15th Int. Conf. Mechanics in Medicine and Biology, 422 - 423, EnglishComputer simulation of effects of deformabilities of red blood cells on blood flow using particle method[Refereed]
- Dec. 2006, Proc. 15th Int. Conf. Mechanics in Medicine and Biology, 80 - 81, EnglishAn adaptive mesh refinement method for CFD analysis of arterial blood flow[Refereed]
- Dec. 2006, Proc. 15th Int. Conf. Mechanics in Medicine and Biology, 420 - 421, EnglishNumerinal simulation of a low Hematocrit blood flow in a small artery with stenosis[Refereed]
- Over the past few decades, a large number of novel numerical methods have been proposed to analyze blood flows and to understand the relationship between vascular diseases and hemodynamics. In this paper, we review recent computational fluid dynamics studies on macroscale hemodynamics such as blood flow in the heart and large arteries, microscale blood flows in small vessels in which blood is assumed to be a suspension of red blood cells in plasma, and single red blood cell motions in an induced flow field. The advantages and disadvantages of numerical methods are discussed, and current trends in these research fields are introduced.The Japan Society of Mechanical Engineers, Oct. 2006, Journal of Biomechanical Science and Engineering, 1(1) (1), 29 - 50, English[Refereed]Scientific journal
- Sep. 2006, JOURNAL OF COMPUTATIONAL PHYSICS, 217(2) (2), 453 - 472, English[Refereed]Scientific journal
- Aug. 2006, Computational Mechanics, 38(3) (3), 211 - 224, English[Refereed]Scientific journal
- Jun. 2006, JOURNAL OF COMPUTATIONAL PHYSICS, 215(1) (1), 81 - 97, English[Refereed]Scientific journal
- Nov. 2004, JSME INTERNATIONAL JOURNAL SERIES B-FLUIDS AND THERMAL ENGINEERING, 47(4) (4), 681 - 689, English[Refereed]Scientific journal
- We have developed a numerical method on Cartesian grid for image-based blood flow simulation. Cartesian grid has advantages for grid generation for the complex and moving boundary problems. Interpolated Differential Operator (IDO) scheme with Local Mesh Refinement method are effectively introduced for blood flow simulations. In order to simulate flow interacting with elastic vessel on Cartesian grid, a new technique INTERGRID has been developed and it is shown that the simulation of fluid-structure interaction problems that structure does not displace over the resolution of grid is carried out.The Japan Society of Mechanical Engineers, Sep. 2004, Transactions of the Japan Society of Mechanical Engineers, Series A, 70(697) (697), 1232 - 1239, Japanese[Refereed]Scientific journal
- 東京 : 日本計算工学会, Jun. 2024, 計算工学講演会論文集 = Proceedings of the Conference on Computational Engineering and Science / 日本計算工学会 編, 29, 1286 - 1290, Japanese細胞膜の拡大による樹状突起スパインのアイソジオメトリック解析—An isogeometric analysis of dendritic spine morphogenesis induced
- 東京 : 日本計算工学会, Jun. 2024, 計算工学講演会論文集 = Proceedings of the Conference on Computational Engineering and Science / 日本計算工学会 編, 29, 1228 - 1230, Japaneseアイソジオメトリック境界要素法による超弾性体シートの沈降挙動解析—An analysis of sedimentation of a hyperelastic sheet using isogeometric boundary element method
- 東京 : 日本計算工学会, Jun. 2024, 計算工学講演会論文集 = Proceedings of the Conference on Computational Engineering and Science / 日本計算工学会 編, 29, 1225 - 1227, Japanese弾性管の蠕動運動により生じる管内流れのアイソジオメトリック境界要素解析—Isogeometric boundary element analysis of flow driven by peristaltic motion of an elastic tube
- 東京 : 日本計算工学会, Jun. 2024, 計算工学講演会論文集 = Proceedings of the Conference on Computational Engineering and Science / 日本計算工学会 編, 29, 1231 - 1236, Japanese粘性流体との相互作用による薄膜の変形の流体構造連成解析—A fluid-structure interaction analysis of the thin film deformation due to interaction with
- 2024, 計算工学講演会論文集(CD-ROM), 29An isogeometric analysis of dendritic spine morphogenesis induced by cell membrane expansion
- 東京 : 日本計算工学会, May 2023, 計算工学講演会論文集 = Proceedings of the Conference on Computational Engineering and Science / 日本計算工学会 編, 28, 761 - 766, Japanese粘性流体中で成長する薄膜の変形のアイソジオメトリック解析—An isogeometric analysis of deformation of a growing thin menbrane in a viscous fluid
- 2019, 計算工学講演会論文集(CD-ROM), 24Large scale parallel computing of cerebral circulation
- 2019, バイオエンジニアリング講演会講演論文集(CD-ROM), 32ndDevelopment of whole-scale cerebral blood flow simulator
- 2019, 日本機械学会計算力学講演会論文集(CD-ROM), 32ndModeling of cerebrovasculature network and numerical simulation of whole-scale cerebral circulation
- Sep. 2018, 8th International Conference on Fluid Mechanics (ICFM8), S10BM0-04, EnglishFLUID-STRUCTURE INTERACTIONS OF NODAL CILIA AXONEME[Refereed]Summary international conference
- (一社)日本耳鼻咽喉科学会, Apr. 2018, 日本耳鼻咽喉科学会会報, 121(4) (4), 569 - 569, Japanese
- 2018, 日本嚥下医学会抄録(Web), 41st嚥下の3D数値流体力学シミュレーションの開発と検討
- Elsevier, 01 Jan. 2018, Integrated Nano-Biomechanics, 1 - 297, EnglishOthers
- 2018, 日本機械学会バイオフロンティア講演会講演論文集(CD-ROM), 29thModeling the cerebral vasculature for numerical simulation in whole scale cerebral blood flow circulation
- 2018, 数値流体力学シンポジウム講演論文集(CD-ROM), 32nd実形状モデルを用いた胃内流動の数値計算
- 2018, バイオエンジニアリング講演会講演論文集(CD-ROM), 31st胃内容物の撹拌・排出の数値シミュレーション
- 2018, 日本機械学会計算力学講演会論文集(CD-ROM), 31stNumerical analysis of gastric mixing and emptying
- 2017, 計算工学講演会論文集(CD-ROM), 22胃から十二指腸への食物排出の数値計算
- 2017, 日本機械学会計算力学講演会論文集(CD-ROM), 30th胃における蠕動運動と流れの関係についての一考察
- 2017, バイオエンジニアリング講演会講演論文集(CD-ROM), 29th胃壁の運動機能と胃内容物攪拌の関係
- 2017, バイオエンジニアリング講演会講演論文集(CD-ROM), 29th胃内部の固体粒子挙動の数値計算
- 日本計算工学会, May 2016, 計算工学講演会論文集 Proceedings of the Conference on Computational Engineering and Science, 21, 4p, JapaneseA Numerical Analysis of Cell Adhesion in Microcirculation
- 2E32 Numerical Analysis Concerning the Reorientation Phenomenon of Sedimenting Red Blood CellWhen keeping blood inside a static tube, it is well known that the red blood cells (RBCs) start to sediment downward due to the density difference between inner fluid and the outer fluid plasma. In present work, we numerically investigate the orientation angle of settling RBCs. First, we confirm that the RBCs change its orientation toward vertical angle as also reported in previous experimental studies. Secondly, we find that this reorientation is faster for a red blood cell with higher Bond number or lower viscosity ratio. In this report, we also discuss how this reorientation speed would impact the overall trajectories of the RBCs.The Japan Society of Mechanical Engineers, 09 Jan. 2016, バイオエンジニアリング講演会講演論文集, 2016(28) (28), "2E32 - 1"-"2E32-4", Japanese
- 2E24 Clarification of the hydrodynamic factors influencing blood cell lateral migrationIn the blood, cells are observed to move perpendicular to the direction of the blood flow in a process called lateral migration. This lateral migration occurs due to several hydrodynamic factors, such as the presence of the vessel wall, the applied Poiseuille flow within the vessel, and cell-cell interactions. However, the effect of these factors has not been well understood. Thus, using the boundary integral method, we have been numerically investigating the effect of the wall and the effect of the curvature of the applied flow on the lateral migration of a single cell. We have shown that the effect of the wall on cell lateral migration is dominant relative to the effect of the flow curvature, even at large distances between the cell and the wall. We have also derived a semi-analytical equation representing the relative effects of the wall and flow curvature, which allows us to predict the migration velocity in slit flows or microvessels. Our results can also be used to develop simplified models, based on the position of the cell within the vessel, for biophysical phenomena such as cell margination and axial migration.The Japan Society of Mechanical Engineers, 09 Jan. 2016, バイオエンジニアリング講演会講演論文集, 2016(28) (28), "2E24 - 1"-"2E24-4", English
- 1C46 Numerical simulation of a swimming ciliate near a water-air or a water-wall interfaceSwimming behavior of microorganism near an interface is important to understand how to prevent bio-film formation, which can be a cause of medical instrument pollution. Recently, we found that a ciliate can be trapped at a water-air interface, though swims away from a water-wall interface. We conducted numerical simulation of swimming microorganism near an interface from hydrodynamic perspective, to reveal the entrapment mechanism. By mimicking microorganism shape in detail, our microorganism model reproduced entrapment phenomena for the first time in the world. We concluded that shape of a ciliate dominates the entrapment phenomena.The Japan Society of Mechanical Engineers, 09 Jan. 2016, バイオエンジニアリング講演会講演論文集, 2016(28) (28), "1C46 - 1"-"1C46-5", Japanese
- 1E11 Numerical simulation of cell adhesion in microchannelsWe numerically investigate the velocity of an adherent cell in various sizes of microchannels. The velocity drastically decreases as decreasing the size of microchannels. When the channel size becomes smaller, the motion of the adherent cell changes from a "rolling motion" to a "bullet motion", where the cell rotates on side wall in rolling motion, while the cell adhere its circular arc to the wall in bullet motion. Larger adhesion force is generated in rear parts of rolling cell, and existed bonds experience rupturing with higher probability because of slip bond. Because cell cannot move forward unless the ligand-receptor bonds in rear parts rupture, frequent rupturing allows the rolling cell to move faster than the cell exhibiting bullet motion. As getting smaller in channel diameter, the surface area attached to the wall is larger and then the number of ligand-receptor bonds is larger for smaller microchannels, resulting in a lower velocity. Our numerical model allows us to investigate the effect of various parameters on adherent cell velocity.The Japan Society of Mechanical Engineers, 09 Jan. 2016, バイオエンジニアリング講演会講演論文集, 2016(28) (28), "1E11 - 1"-"1E11-5", Japanese
- The Japan Society of Mechanical Engineers, 2016, 講演論文集, 2016(51) (51), 187 - 188, Japanese195 Numerical simulation of a sperm cell swimming in a viscoelastic fluid
- 2016, バイオエンジニアリング講演会講演論文集(CD-ROM), 28th蠕動運動と胃内容物攪拌の関係
- The Japan Society of Mechanical Engineers, 2016, The Proceedings of Conference of Tohoku Branch, 2016(0) (0), 191 - 192, Japanese
- The Japan Society of Mechanical Engineers, 01 Oct. 2015, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2015(26) (26), 123 - 124, JapaneseB212 A numerical simulation of cytoskeletal dynamics
- The Japan Society of Mechanical Engineers, 16 Sep. 2015, Proceedings of the ... Asian Pacific Conference on Biomechanics : emerging science and technology in biomechanics, 2015(8) (8), 366 - 366, EnglishPS8-15 Mechanics of nodal cilia in early mouse embryo(PS8: Poster Short Presentation VIII,Poster Session)
- The Japan Society of Mechanical Engineers, 16 Sep. 2015, Proceedings of the ... Asian Pacific Conference on Biomechanics : emerging science and technology in biomechanics, 2015(8) (8), 365 - 365, EnglishPS8-14 Visualization of intestinal peristalsis of mosquito midgut by using micro X-ray imaging(PS8: Poster Short Presentation VIII,Poster Session)
- The Japan Society of Mechanical Engineers, 16 Sep. 2015, Proceedings of the ... Asian Pacific Conference on Biomechanics : emerging science and technology in biomechanics, 2015(8) (8), 268 - 268, EnglishPS3-7 DEVELOPMENT OF A NUMERICAL MODEL OF CYTOSKELETON DYNAMICS(PS3: Poster Short Presentation III,Poster Session)
- The Japan Society of Mechanical Engineers, 16 Sep. 2015, Proceedings of the ... Asian Pacific Conference on Biomechanics : emerging science and technology in biomechanics, 2015(8) (8), 262 - 262, EnglishPS3-1 Hydrodynamic behavior of small particles in a microchannel(PS3: Poster Short Presentation III,Poster Session)
- 日本計算工学会, Jun. 2015, 計算工学講演会論文集 Proceedings of the Conference on Computational Engineering and Science, 20, 3p, EnglishCapsule lateral migration : shear gradient vs. wall
- The Japan Society of Mechanical Engineers, 08 Jan. 2015, バイオエンジニアリング講演会講演論文集, 2015(27) (27), 11 - 12, Japanese1A15 A numerical simulation of rolling and adhesion of red blood cells infected by malaria
- The Japan Society of Mechanical Engineers, 08 Jan. 2015, バイオエンジニアリング講演会講演論文集, 2015(27) (27), 13 - 14, Japanese1A16 Numerical Simulation of the Nodal Ciliary Motion Driven by the Dynein Motor Protein
- The Japan Society of Mechanical Engineers, 08 Jan. 2015, バイオエンジニアリング講演会講演論文集, 2015(27) (27), 5 - 6, Japanese1A12 Behavior of tracer particles in capsule suspensions : the effect of size of tracer particles
- The Japan Society of Mechanical Engineers, 08 Jan. 2015, バイオエンジニアリング講演会講演論文集, 2015(27) (27), 165 - 166, Japanese1D35 Rheology of a red blood cell suspension in a simple shear flow
- 2015, バイオエンジニアリング講演会講演論文集, 27th胃内のせん断応力の数値解析
- 2015, 計算工学講演会論文集(CD-ROM), 20胃内容物攪拌の数値計算:胃壁の運動の影響
- The Japan Society of Mechanical Engineers, 02 Oct. 2014, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2014(25) (25), 21 - 22, JapaneseA112 Numerical Simulation of the Ciliary Motion Driven by the Motor Protein
- The Japan Society of Mechanical Engineers, 02 Oct. 2014, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2014(25) (25), 19 - 20, JapaneseA111 A numerical simulation of a microorganism behavior near an interface
- 日本計算工学会, Jun. 2014, 計算工学講演会論文集 Proceedings of the Conference on Computational Engineering and Science, 19, 4p, JapaneseNumerical analysis of dense capsule suspension with changing volume fraction
- The Japan Society of Mechanical Engineers, 10 Jan. 2014, バイオエンジニアリング講演会講演論文集, 2014(26) (26), 539 - 540, Japanese2G34 A simulation of nutrient uptake in a suspension of squirmers
- The Japan Society of Mechanical Engineers, 10 Jan. 2014, バイオエンジニアリング講演会講演論文集, 2014(26) (26), 245 - 246, Japanese1G43 A numerical simulation of the cytoadhesion of malaria-infected red blood cells using a ligand-receptor interaction model
- The Japan Society of Mechanical Engineers, 10 Jan. 2014, バイオエンジニアリング講演会講演論文集, 2014(26) (26), 247 - 248, Japanese1G44 A numerical analysis of the behavior of cancer cells related to hematogenous metastasis in microvasculature
- The Japan Society of Mechanical Engineers, 10 Jan. 2014, バイオエンジニアリング講演会講演論文集, 2014(26) (26), 235 - 236, Japanese1G33 A numerical simulation of motion of food in the stomach
- The Japan Society of Mechanical Engineers, 10 Jan. 2014, バイオエンジニアリング講演会講演論文集, 2014(26) (26), 439 - 440, Japanese2E15 Numerical analysis of a red blood cell flowing through a micro flow channel
- The Japan Society of Mechanical Engineers, 10 Jan. 2014, バイオエンジニアリング講演会講演論文集, 2014(26) (26), 445 - 446, Japanese2E22 Mechanism of the non-linear response of viscosity to volume fraction in dense capsule suspension
- The Japan Society of Mechanical Engineers, 10 Jan. 2014, バイオエンジニアリング講演会講演論文集, 2014(26) (26), 443 - 444, Japanese2E21 A numerical simulation of capsule behavior in a near-wall shear flow
- 一般社団法人日本機械学会, 2014, 講演論文集, 2014(49) (49), 131 - 132, Japanese167 気液界面における微生物の遊泳シミュレーション
- J027014 Simulation of nutrient uptake by swimming microorganisms in a suspensionLittle is known about the mass transport in microbial suspension in previous studies. The aim of this study is to analyze the effect of the swimming motion on the nutrient uptake. We modeled a microorganism as a squirmer and calculated its locomotion by boundary element method . Moreover we simulated the nutrient uptake by tracking nutrient particles. The results show that the nutrient uptake is strongly affected by the swimming mode of a microorganism.The Japan Society of Mechanical Engineers, 08 Sep. 2013, Mechanical Engineering Congress, Japan, 2013, "J027014 - 1"-"J027014-4", Japanese
- J027011 A Numerical Simulation of Collective Swimming of MicroorganismsMicroorganisms play a vital role in many biological, medical and engineering phenomena. Some recent research efforts have demonstrated the importance of biomechanics in understanding certain aspects of microorganism behaviors such as locomotion and collective motions of cells. Previous studies had problems of high computational load in simulating many-body interaction of swimmers. In this study, we propose a boundary element method, based on the double-layer representation, for calculating interactions of many-body swimmers in Stokes flow regime. We use Graphic Processing Unit (GPU) to speed up the computation. We then analyze interactions of 100 swimmers.The Japan Society of Mechanical Engineers, 08 Sep. 2013, Mechanical Engineering Congress, Japan, 2013, "J027011 - 1"-"J027011-4", Japanese
- The Japan Society of Mechanical Engineers, 15 Mar. 2013, 講演論文集, 2013(48) (48), 8 - 9, Japanese102 A Numerical Analysis of Bimodal Capsule Suspensions
- The Japan Society of Mechanical Engineers, 08 Jan. 2013, バイオエンジニアリング講演会講演論文集, 2013(25) (25), 299 - 300, Japanese2B14 Rheological analysis of capsule suspension using boundary element method
- The Japan Society of Mechanical Engineers, 08 Jan. 2013, バイオエンジニアリング講演会講演論文集, 2013(25) (25), 387 - 388, Japanese2E02 Analysis of Red Blood Cell Behavior in a Narrow Tube
- The Japan Society of Mechanical Engineers, 08 Jan. 2013, バイオエンジニアリング講演会講演論文集, 2013(25) (25), 307 - 308, Japanese2B19 A numerical analysis of the cell migration in microcirculatory blood flow
- The Japan Society of Mechanical Engineers, 08 Jan. 2013, バイオエンジニアリング講演会講演論文集, 2013(25) (25), 117 - 118, Japanese1D04 Numerical analysis of swimming model microorganisms by GPU
- The Japan Society of Mechanical Engineers, 2013, The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2013(0) (0), 111 - 112, Japanese
- The Japan Society of Mechanical Engineers, 2013, The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2013(0) (0), 609 - 610, Japanese
- Bioconvection patterns are often observed in microalgae suspensions of randomly, but on average upwardly, swimming microalgae which are little denser than water. When we culture microalgae in the laboratory, we usually add aeration for mixing the culture fluid and supplying oxygen and carbon dioxide. However, the effect of aeration on the bioconvection pattern and the transport phenomena in the suspension is unclear. In this study, we investigated bioconvection pattern in a suspension of Chlamydomonas reinhardtii under the condition with aeration. Bioconvection pattern in a cylindrical container was visualized by red illumination, and white light for phototaxis could be added from above. Small bubbles were injected by a needle connected to a syringe. Observation of bioconvection patterns of microalgae suspension with aeration showed three kinds of flow patterns depending on the bubble flow rate. When there was no bubble flow, conventional bioconvection was dominant. When flow rate was low, observed pattern in the cylindrical container was split into two flow regions, where the bioconvection and the bubble flow were dominant respectively. When flow rate was high, bubble flow became dominant and no clear bioconvection was observed. Such changes in the bioconvection pattern have not been reported before. These findings are important to understand the transport phenomena in algae suspensions in engineering settings.The Japan Society of Mechanical Engineers, 2013, The Proceedings of Mechanical Engineering Congress, Japan, 2013(0) (0), _J027013 - 1-_J027013-4, Japanese
- The Japan Society of Mechanical Engineers, 2013, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2013(0) (0), 45 - 46, Japanese
- The Japan Society of Mechanical Engineers, 2013, The Proceedings of Conference of Tohoku Branch, 2013(0) (0), 10 - 11, Japanese
- バイオメカニズム学会, Dec. 2012, バイオメカニズム学術講演会予稿集, 33回, 33 - 34, Japanese計算生体力学シミュレーションによるミクロからマクロスケールの生体機能の解析
- The Japan Society of Mechanical Engineers, 06 Oct. 2012, The Computational Mechanics Conference, 2012(25) (25), 9 - 10, Japanese806 Numerical simulation of dynamics of solid particles in the stomach
- The Japan Society of Mechanical Engineers, 06 Oct. 2012, The Computational Mechanics Conference, 2012(25) (25), 11 - 12, Japanese807 Numerical analysis of swimming model microorganisms by a boundary element method based on the double-layer representation
- The Japan Society of Mechanical Engineers, 06 Oct. 2012, The Computational Mechanics Conference, 2012(25) (25), 3 - 4, Japanese803 Numerical simulation of adhesive phenomena of Pf-T-IRBC and the endothelial cells
- The Japan Society of Mechanical Engineers, 04 Oct. 2012, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2012(23) (23), 13 - 14, JapaneseA107 Simulation of nutrient uptake by a swimming model microorganism
- 01 Sep. 2012, 京都大学数理解析研究所講究録, (1808) (1808), 121 - 126, Japaneseストークス流れ中の非球形カプセルの配向現象Introduction research institution
- 日本計算工学会, May 2012, 計算工学講演会論文集 Proceedings of the Conference on Computational Engineering and Science, 17, 4p, JapaneseDevelopment of a numerical model for micro-scale blood flow simulation using GPU computing
- 日本計算工学会, May 2012, 計算工学講演会論文集 Proceedings of the Conference on Computational Engineering and Science, 17, 4p, JapaneseNumerical Analysis of a Red Blood Cells in Simple Shear Flow
- 日本計算工学会, May 2012, 計算工学講演会論文集 Proceedings of the Conference on Computational Engineering and Science, 17, 4p, JapaneseDevelopment of a multi GPU implementation of a boundary integral method for capsule flow
- The Japan Society of Mechanical Engineers, 13 Mar. 2012, 講演論文集, 2012(47) (47), 28 - 29, Japanese111 Simulation of mass absorption of swimming model microorganisms by a boundary element method
- The Japan Society of Mechanical Engineers, 13 Mar. 2012, 講演論文集, 2012(47) (47), 26 - 27, Japanese110 Numerical analysis of swimming model microorganisms by a boundary element method
- The Japan Society of Mechanical Engineers, 13 Mar. 2012, 講演論文集, 2012(47) (47), 32 - 33, Japanese113 Numerical analysis of adhesive phenomena of malaria-infected red blood cells
- The Japan Society of Mechanical Engineers, 13 Mar. 2012, 講演論文集, 2012(47) (47), 24 - 25, Japanese109 Analysis of Red Blood Ce11 Deformation in Flow Field Using a Boundary Element Method
- The Japan Society of Mechanical Engineers, 13 Mar. 2012, 講演論文集, 2012(47) (47), 230 - 231, Japanese212 Development of a numerical model for blood flow in microvessels using GPGPU computing
- The Japan Society of Mechanical Engineers, 06 Jan. 2012, バイオエンジニアリング講演会講演論文集, 2012(24) (24), "8G24 - 1"-"8G24-2", Japanese8G24 A 3-dimensional computation on gastric mixing using GPU.
- The Japan Society of Mechanical Engineers, 06 Jan. 2012, バイオエンジニアリング講演会講演論文集, 2012(24) (24), "8F34 - 1"-"8F34-2", Japanese8F34 Development of a numerical model of microcirculatory blood flow in malaria infection based on GPU
- The Japan Society of Mechanical Engineers, 06 Jan. 2012, バイオエンジニアリング講演会講演論文集, 2012(24) (24), "8F13 - 1"-"8F13-2", Japanese8F13 Development of a GPU computing platform for accurate simulations of large-scale cellular flow
- The Japan Society of Mechanical Engineers, 06 Jan. 2012, バイオエンジニアリング講演会講演論文集, 2012(24) (24), "7H22 - 1"-"7H22-2", Japanese7H22 A fast simulation of pulmonary airflow and inhaled particles by GPU
- 2012, 日本機械学会東北支部総会・講演会講演論文集, 47th固体成分を含む胃内容物の攪拌の数値シミュレーション
- 2012, 日本機械学会計算力学講演会論文集(CD-ROM), 25th胃内部の固体粒子運動の数値シミュレーション
- The Japan Society of Mechanical Engineers, 08 Oct. 2011, The Computational Mechanics Conference, 2011(24) (24), 642 - 643, Japanese2306 A numerical computation on gastric mixing
- The Japan Society of Mechanical Engineers, 08 Oct. 2011, The Computational Mechanics Conference, 2011(24) (24), 639 - 641, Japanese2305 Numerical simulation of swallowing based on videofluorography
- The Japan Society of Mechanical Engineers, 08 Oct. 2011, The Computational Mechanics Conference, 2011(24) (24), 646 - 647, Japanese2308 A fast simulation of capsule motion in flow by GPU computing
- The Japan Society of Mechanical Engineers, 08 Oct. 2011, The Computational Mechanics Conference, 2011(24) (24), 644 - 645, Japanese2307 Development of GPU simulation of microcirculatory blood flow
- The Japan Society of Mechanical Engineers, 06 Oct. 2011, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2011(22) (22), 61 - 62, JapaneseB112 Development of GPU computing method for capsule suspension
- The Japan Society of Mechanical Engineers, 15 Mar. 2011, 講演論文集, 2011(46) (46), 170 - 171, Japanese184 Numerical simulation of red blood cell flow in micro vessels : effects of endothelial cell geometry
- The Japan Society of Mechanical Engineers, 07 Jan. 2011, バイオエンジニアリング講演会講演論文集, 2010(23) (23), 559 - 560, Japanese9G-17 Numerical simulation of swallowing based on videofluorography
- The Japan Society of Mechanical Engineers, 07 Jan. 2011, バイオエンジニアリング講演会講演論文集, 2010(23) (23), 557 - 558, Japanese9G-16 Development of a computational fluid dynamics model of gastric mixing
- The Japan Society of Mechanical Engineers, 07 Jan. 2011, バイオエンジニアリング講演会講演論文集, 2010(23) (23), 389 - 390, Japanese9E-08 Numerical analysis of cell behavior in blood flow
- The Japan Society of Mechanical Engineers, 2011, The Proceedings of Conference of Tohoku Branch, 2011(0) (0), 166 - 167, Japanese
- The Japan Society of Mechanical Engineers, 2011, The Proceedings of the Bioengineering Conference Annual Meeting of BED/JSME, 2010(0) (0), 487 - 488, Japanese
- The Japan Society of Mechanical Engineers, 2011, The Proceedings of Conference of Tohoku Branch, 2011(0) (0), 176 - 177, Japanese
- The Japan Society of Mechanical Engineers, 11 Nov. 2010, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2010(21) (21), 13 - 14, JapaneseA107 Changes in blood flow caused by adhesive properties of malaria-infected red blood cells
- The Japan Society of Mechanical Engineers, 11 Nov. 2010, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2010(21) (21), 15 - 16, JapaneseA108 Effects of content volume on the flow in a stomach
- The Japan Society of Mechanical Engineers, 12 Mar. 2010, 講演論文集, 2010(45) (45), 128 - 129, Japanese164 Numerical simulation of gastric mixing by particle method
- The Japan Society of Mechanical Engineers, 12 Mar. 2010, 講演論文集, 2010(45) (45), 184 - 185, Japanese192 Three-dimensional simulation of behavior of malaria infected red blood cell in blood flow
- The Japan Society of Mechanical Engineers, 12 Mar. 2010, 講演論文集, 2010(45) (45), 192 - 193, Japanese196 Basic Study for Bio-micropump by using Escherichia coli
- The Japan Society of Mechanical Engineers, 12 Mar. 2010, 講演論文集, 2010(45) (45), 186 - 187, Japanese193 Measurement of mesoscopic flow structure in a suspension of Escherichia coli by using micro-PIV system
- The Japan Society of Mechanical Engineers, 12 Mar. 2010, 講演論文集, 2010(45) (45), 188 - 189, Japanese194 Behavior of cancer cells flowing in microchannels
- The Japan Society of Mechanical Engineers, 08 Jan. 2010, バイオエンジニアリング講演会講演論文集, 2009(22) (22), 14 - 14, Japanese0205 Effects of adhesion property of malaria infected red blood cells on blood flows
- The Japan Society of Mechanical Engineers, 08 Jan. 2010, バイオエンジニアリング講演会講演論文集, 2009(22) (22), 280 - 280, Japanese0625 Patient-specific morphological and blood flow analysis of pulmonary artery in the case of severe deformations of the lung
- The Japan Society of Mechanical Engineers, 08 Jan. 2010, バイオエンジニアリング講演会講演論文集, 2009(22) (22), 270 - 270, Japanese0513 Computation biomechanics of transport phenomenon in the small intestine
- The Japan Society of Mechanical Engineers, 08 Jan. 2010, バイオエンジニアリング講演会講演論文集, 2009(22) (22), 169 - 169, Japanese1005 Monitoring system of water content in a body by bioimpedance method
- The Japan Society of Mechanical Engineers, 08 Jan. 2010, バイオエンジニアリング講演会講演論文集, 2009(22) (22), 156 - 156, Japanese0914 Development of a mobile toilet system for elderly
- The Japan Society of Mechanical Engineers, 2010, The Proceedings of the JSME Conference on Frontiers in Bioengineering, 2010(0) (0), 105 - 106, Japanese
- The Japan Society of Mechanical Engineers, 06 Nov. 2009, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2009(20) (20), 111 - 112, EnglishB210 Patient-specific study on pulmonary blood now in the case of severe deformations of the lung
- The Japan Society of Mechanical Engineers, 06 Nov. 2009, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2009(20) (20), 109 - 110, JapaneseB209 Effect of anti-cancer drug on the rheological property of cancer cells
- The Japan Society of Mechanical Engineers, 06 Nov. 2009, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2009(20) (20), 39 - 40, JapaneseB106 Motion analysis of bolus and epiglottis based on VF images
- The Japan Society of Mechanical Engineers, 10 Oct. 2009, The Computational Mechanics Conference, 2009(22) (22), 544 - 545, Japanese2001 Development of a three-dimensional model of hemodynamics arising from malaria infection
- Oct. 2009, ブイヤント航空, 37, 81 - 88, Japanese変形機構を有する室内飛行船の開発Introduction other
- Forum on Information Technology, 20 Aug. 2009, 情報科学技術フォーラム講演論文集, 8(3) (3), 555 - 556, JapaneseK-014 Development of a mobile toilet system for solitary elderly people
- The Japan Society of Mechanical Engineers, 13 Mar. 2009, 講演論文集, 2009(44) (44), 100 - 101, Japanese151 Airship type watch-over system cruising in a house with occasional deformation
- The Japan Society of Mechanical Engineers, 13 Mar. 2009, 講演論文集, 2009(44) (44), 168 - 169, Japanese187 The relationship between cancer cell deformability and its metastasis
- The Japan Society of Mechanical Engineers, 13 Mar. 2009, 講演論文集, 2009(44) (44), 188 - 189, Japanese198 Flow analysis of digested material in the small intestine
- The Japan Society of Mechanical Engineers, 13 Mar. 2009, 講演論文集, 2009(44) (44), 170 - 171, Japanese188 Basic study on monitoring system of water content in a body for elderly people
- The Japan Society of Mechanical Engineers, 13 Mar. 2009, 講演論文集, 2009(44) (44), 174 - 175, Japanese190 A study on the mechanism of swallowing using videofluorography
- The Japan Society of Mechanical Engineers, 13 Mar. 2009, 講演論文集, 2009(44) (44), 172 - 173, Japanese189 Quantification of mechanical stimulus to induce avoiding reaction of Paramecium
- The Japan Society of Mechanical Engineers, 13 Mar. 2009, 講演論文集, 2009(44) (44), 190 - 191, Japanese199 Development of a numerical model of rosettes in malaria infection
- The Japan Society of Mechanical Engineers, 22 Jan. 2009, バイオエンジニアリング講演会講演論文集, 2008(21) (21), 411 - 412, Japanese439 Development of a mobile toilet robot
- The Japan Society of Mechanical Engineers, 22 Jan. 2009, バイオエンジニアリング講演会講演論文集, 2008(21) (21), 401 - 402, Japanese434 Development of respiration monitoring system for home-care
- The Japan Society of Mechanical Engineers, 22 Jan. 2009, バイオエンジニアリング講演会講演論文集, 2008(21) (21), 87 - 88, Japanese215 Measurement of blood flow through bifurcation and confluence of microchannel with confocal micro-PIV system
- The Japan Society of Mechanical Engineers, 22 Sep. 2008, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2008(19) (19), 153 - 154, JapaneseB412 An automatic inhaler control system based on respiration monitoring
- The Japan Society of Mechanical Engineers, 22 Sep. 2008, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2008(19) (19), 47 - 48, JapaneseB203 Behavior of a Red Blood Cell in a Simple Shear Flow Simulated by a Boundary Element Method
- The Japan Society of Mechanical Engineers, 22 Sep. 2008, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2008(19) (19), 58 - 59, JapaneseB209 A Locomotive System Mimicking Pedal Locomotion of Snails for the Capsule Endoscope
- 1G3-2 Development of a mobile toilet systemA number of elderly people have a difficulty in going to the toilet by themselves. They sometimes wear an adult diaper but it makes the elderly uncomfortable and unsanitary. Moreover, their pride is injured by wearing the diaper. A portable toilet is also used for the elderly requiring assistance to the toilet. The portable toilet is not a sufficient solution because it is also uncomfortable and unsanitary for them. We propose a mobile toilet system for solving this problem. The concept of the proposed system is as follows. The toilet waits for calling signal from the elderly at standby room. When the calling signal is received, the toilet autonomously goes to the bedroom and approaches the elderly. After excreting, the toilet returns to the standby room and automatically disposes feces. This system is also equipped with analyzing function of feces for monitoring their health condition. We have developed a prototype of the toilet.The Japan Society of Mechanical Engineers, 17 Sep. 2008, The JSME Symposium on Welfare Engineering, 2008, 176 - 177, Japanese
- 1G2-2 Development of respiration monitoring system for home-care patients of respiratory diseasesA number of patients are suffering from respiratory diseases, such as dyspnea, sleep apnea syndrome (SAS), asthma and chronic obstructive pulmonary disease (COPD). These patients can be supported by early detection of symptom and administration of milder treatment. However, it is a serious burden for them and their family to care for their respiratory conditions in daily life. We propose a new home-care system for such patients. The system is an automatic inhaler control system based on continuous respiration monitoring. We employ a mask-type unit to install a measurement sensor for respiration together with an inhaler. Respiration is monitored using a thermocouple in the mask. Respiratory rate is measured by counting peaks of temperature change due to expiration and inspiration. The error of respiratory rate at rest in sitting posture was within 2% between the measurement and the reference. Based on the monitored data, the inhaler can be controlled automatically. Moreover, the information of respiration can be shared with family, hospital, and local supporters at a long distance through a computer network.The Japan Society of Mechanical Engineers, 17 Sep. 2008, The JSME Symposium on Welfare Engineering, 2008, 164 - 165, Japanese
- 日本計算工学会, 19 May 2008, Proceedings of the conference on computational engineering and science, 13(2) (2), 827 - 830, JapaneseAvailability of Adaptive Mesh Refinement method for the analysis of pulmonary airflow
- 日本計算工学会, 19 May 2008, Proceedings of the conference on computational engineering and science, 13(2) (2), 533 - 536, JapaneseA three-dimensional model of malaria-infected blood flow
- The Japan Society of Mechanical Engineers, 15 Mar. 2008, 講演論文集, 2008(43) (43), 53 - 54, Japanese126 Development of the self-propelled intelligent toilet
- The Japan Society of Mechanical Engineers, 24 Jan. 2008, バイオエンジニアリング講演会講演論文集, 2007(20) (20), 219 - 220, Japanese608 Measurement of physical load by a wearable thermometer system
- The Japan Society of Mechanical Engineers, 24 Jan. 2008, バイオエンジニアリング講演会講演論文集, 2007(20) (20), 1 - 2, Japanese101 Measurement of the blood flow in a microchannel with stenosis by confocal-micro-PTV system
- The Japan Society of Mechanical Engineers, 24 Jan. 2008, バイオエンジニアリング講演会講演論文集, 2007(20) (20), 9 - 10, English105 DISPERSION OF RED BLOOD CELLS IN MICROCHANNELS : A CONFOCAL MICRO-PTV ASSESSMENT
- The Japan Society of Mechanical Engineers, 24 Jan. 2008, バイオエンジニアリング講演会講演論文集, 2007(20) (20), 57 - 58, Japanese210 Interactions between two swimming bacteria
- The Japan Society of Mechanical Engineers, 24 Jan. 2008, バイオエンジニアリング講演会講演論文集, 2007(20) (20), 35 - 36, Japanese118 Numerical Simulation of Saccular Aneurysm Formation in a Realistic Cerebral Artery Model
- The Japan Society of Mechanical Engineers, 25 Nov. 2007, The Computational Mechanics Conference, 2007(20) (20), 189 - 190, Japanese2304 Multiscale modeling of pulmonary airway system
- The Japan Society of Mechanical Engineers, 25 Nov. 2007, The Computational Mechanics Conference, 2007(20) (20), 583 - 584, Japanese303 Application of a High-Order AMR Method to Pulmonary Airflow Simulations
- The Japan Society of Mechanical Engineers, 25 Nov. 2007, The Computational Mechanics Conference, 2007(20) (20), 341 - 342, Japanese2211 A Simulation Study on Saccular Cerebral Aneurysm Formation Considering Biological Reactions
- The Japan Society of Mechanical Engineers, 05 Oct. 2007, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2007(18) (18), 127 - 128, JapaneseB208 Development of respiration measurement unit with wearable system
- 01 Jul. 2007, 可視化情報学会誌 = Journal of the Visualization Society of Japan, 27, 141 - 142, EnglishBlood Cell Motions and Interactions in Microchannels
- 日本計算工学会, May 2007, Proceedings of the conference on computational engineering and science, 12(1) (1), 213 - 216, JapaneseNumerical simulation of cerebral aneurysm growth considering arterial adaptation
- The Japan Society of Mechanical Engineers, 06 Jan. 2007, バイオエンジニアリング講演会講演論文集, 2006(19) (19), 140 - 141, Japanese421 An adaptive mesh refinement method for numerical analysis of pulmonary airflow
- The Japan Society of Mechanical Engineers, 06 Jan. 2007, バイオエンジニアリング講演会講演論文集, 2006(19) (19), 318 - 319, Japanese331 Meso-scale structure in a concentrated suspension of micro-organisms
- The Japan Society of Mechanical Engineers, 06 Jan. 2007, バイオエンジニアリング講演会講演論文集, 2006(19) (19), 298 - 299, Japanese237 Numerical analysis of ATP transport in blood vessels
- The Japan Society of Mechanical Engineers, 10 Nov. 2006, Proceedings of the ... JSME Conference on Frontiers in Bioengineering, 2006(17) (17), 3 - 4, JapaneseA101 Development of a wearable system for an quantification measurement of human motions in daily life
- The Japan Society of Mechanical Engineers, 02 Nov. 2006, The Computational Mechanics Conference, 2006(19) (19), 499 - 500, Japanese527 The effect of arterial wall movement on the wall shear stress by a fluid-solid interaction computational study
- Joint work, Springer, Nov. 2018, EnglishFrontiers in Computational Fluid-Structure Interaction and Flow Simulation: A Numerical Analysis of Rheology of Capsule Suspensions Using a GPU-Accelerated Boundary Element MethodScholarly book
- Joint work, Elsevier, Jul. 2018, EnglishIntegrated Nano-Biomechanics: 3.2 Gastric Motility and Flow in the StomachScholarly book
- Joint work, Elsevier, Jul. 2018, EnglishIntegrated Nano-Biomechanics: 3.1 Dynamics of SwallowingScholarly book
- Joint work, Elsevier, Jul. 2018, EnglishIntegrated Nano-Biomechanics: 2.3 Cell Adhesion in MicrovesselsScholarly book
- Joint editor, Elsevier, Jul. 2018, EnglishIntegrated Nano-BiomechanicsScholarly book
- Joint editor, Springer, 2014, EnglishVisualization and Simulation of Complex Flows in Biomedical EngineeringScholarly book
- Osaka University MEI-Center Summer School 2019, Aug. 2019, English, Suita, Japan, International conferenceComputation of complex physiological flows[Invited]Invited oral presentation
- 29th International Symposium on Cerebral Blood Flow, Metabolism, and Function, Jul. 2019, English, Yokohama, Japan, International conferenceDevelopment of a numerical model of whole-scale cerebral circulationPoster presentation
- 6th International Conference on Computational and Mathematical Biomedical Engineering, Jun. 2019, English, Sendai, Japan, International conferenceModeling cerebral vasculatures for analysis of the whole cerebral circulationPoster presentation
- 71st Annual Meeting of the APS Division of Fluid Dynamics, Nov. 2018, English, Atlanta, USA, International conferenceHemorheology of dense suspension of red blood cells in a wall-bounded shear flowOral presentation
- 8th World Congress on Biomechanics, Jul. 2018, English, Dublin, Ireland, International conferenceRelationship between gastric wall motility and mixing of liquid foods in the stomachPoster presentation
- 8th World Congress on Biomechanics, Jul. 2018, English, Dublin, Ireland, International conferencePerioperative hemodynamic changes in the patient with pulmonary arterial hypertension by use of thoracic 4D-flow MRIPoster presentation
- 8th World Congress on Biomechanics, Jul. 2018, English, Dublin, Ireland, International conferenceNumerical simulation of cytoadhesion of red blood cells infected by Plasmodium falciparumInvited oral presentation
- Joint Meeting of the European Society for Clinical Hemorheology and Microcirculation, the International Society of Clinical Hemorheology, and the International Society of Biorheology, Jul. 2018, English, Krakow, Porland, International conferenceEffect of internal viscosity on suspension rheology of red blood cellsOral presentation
- 8th World Congress on Biomechanics, Jul. 2018, English, Dublin, Ireland, International conferenceCell adhesion during bullet and rolling motion in capillariesInvited oral presentation
- 日本機械学会2018年度年次大会, 2018, Japanese, 吹田, Domestic conference微小循環の血液の流れを計算するInvited oral presentation
- 第14回東北大学REDEEMシンポジウム, 2018, Japanese, 東京, Domestic conference体の中の流れを計算するInvited oral presentation
- 第90回バイオメクフォーラム, 2018, Japanese, 豊中, Domestic conference体の中の複雑な流れを計算するInvited oral presentation
- 第50回生物機械システム研究会, 2018, Japanese, 豊中, Domestic conference胃の中の流れを計算するInvited oral presentation
- 日本学術振興会, 科学研究費助成事業, 基盤研究(A), 神戸大学, 05 Apr. 2021 - 31 Mar. 2024流体構造生化学連成解析によるニューロンの移動モードと大脳皮質形成の力学の解明哺乳類の大脳皮質深部で誕生した神経細胞(ニューロン)は,三種類の移動モードを駆使して脳表層に到着し,インサイドアウトと呼ばれる六層構造の大脳皮質を形成する. 本研究の目的は,流体構造生化学連成解析とイン・ビボ細胞実験の統合的な手法によって,ニューロンの移動モードの変化とインサイドアウト構造の形成メカニズムを力学に基づいて明らかにすることである.そのための基盤計算技術として,細胞膜の固体力学,細胞質と細胞外の液体の流体力学,細胞接着タンパクと細胞骨格タンパクの生化学反応を連成するトランススケール流体構造生化学連成解析手法を開発する. 2021年度は,ニューロンの先導突起の挙動を再現できるトランススケール流体構造生化学連成解析手法の基礎を構築した.生体組織の成長理論をヒントに,局所的な生体膜の面積増加と薄膜の力学を連成する手法を開発した.非一様有理Bスプライン(NURBS)関数を用いて高次に表現した曲面に対し,細胞膜に対する代表的な構成則であるスカラックのひずみエネルギー関数(Skalak et al., Biophys. J., 1973)とヘルフリッヒの曲げエネルギー関数(Helfrich, Zeitschrift fur Naturforschung C, 1973)を弱形式で記述し,アイソジオメトリック解析を適用した.マッシュルーム形状の先導突起や長く伸びた先導突起を再現することに成功し,さらに,これらの先導突起の形状を記述する理論解を導出した.
- 日本学術振興会, 科学研究費助成事業, 学術変革領域研究(A), 神戸大学, 10 Sep. 2021 - 31 Mar. 2023薄く時間変化する生体建築部材の流体構造連成解析ーからだ建築のCAEの方法生体の組織を構成する建築部材は,多くの場合,繊維と膜と液体であり,例えば,上皮組織の管腔構造などが作られる.これらの建築部材に共通する特徴は,薄い構造であること,部材の数や形が時間変化すること,流体の中で建築作業が進行することである.本研究の目的は,生体建築部材から作られる生体組織のコンピュータ支援エンジニアリング(CAE)の手法を開発することである.具体的には,建築部材の変形,成長,結合の変化を考慮して生体構造力学を数理モデル化し,T-スプライン曲面理論に基づくアイソジオメトリック解析を応用する流体構造連成計算手法を開発する.これを用いて,イン・ビボ実験で得られている螺旋形状の血管形成の再現を試みる. 2021年度は,生体建築部材の流体構造連成解析手法として,Tースプライン曲面理論に基づくアイソジオメトリック流体構造連成解析のフレームワークを開発した.この手法は曲面の高次表現に特徴があり,薄い構造の曲げ変形を高精度に計算することができる.管腔構造の生体組織に対し,成長を伴う管壁の構造力学を生体組織の成長理論とキルヒホッフ・ラブシェルを用いて定式化している.現在,この手法を用いて,血管を模擬した管腔構造に対する簡易的なパラメトリック解析を実施している.管腔構造が一次元的,二次元的,三次元的に座屈変形するパターンが得られており,それぞれの座屈変形パターンに至る条件を検討し,メカニズムを明らかにしようとしているところである.
- 日本学術振興会, 科学研究費助成事業, 基盤研究(C), 東北大学, 01 Apr. 2019 - 31 Mar. 2023腹部大動脈瘤の拡大速度を規定する病理組織学的因子に関する前向きコホート研究昨年度に報告した通り現状ではコロナウイルス感染拡大により、研究計画遂行に大きな支障が生じている。今年度は遅れを取り戻すべく、昨年度と同様に大動脈瘤の拡大速度を規定する病理組織学的因子を解析するため、大動脈瘤血流シミレーション技術の確立と習得、大動脈瘤症例の瘤径の継時的変化の観察、また、大動脈瘤壁の組織サンプルの蓄積、得た技術をもとにした大動脈瘤破裂症例の血流シミレーション等を行う予定であった。しかしながら、今年度も引き続いてコロナ感染は拡大に歯止めがかからず、数回の波も出現した。研究代表者が所属するのが大規模医療機関である事から、大動脈瘤血流シミレーションソフトを開発する予定であった神戸大学との共同研究が、人的交流を含めて困難である状況は変わっていない。それゆえ、現在に至るまでもシミレーションの基盤を確立する段階に至っていない。オンラインミーティングを活用もしているものの、オンラインではその特性からプライバシーに配慮した患者データのやり取りには限界があり、それを元にしたシミレーションデモは行っているものの、数名程度にとどまっている。また、引き続きコロナウイルス感染症の影響で、そもそも大動脈瘤の新規受診症例が減少していることは変わりなく、また、ICU病床・手術室の利用制限も同様であるため、大動脈瘤手術症例の蓄積を行う事が困難である事にも変わりがない。したがって今年度も研究実績は、残念ながらほぼ得られていない。コロナウイルス感染症は収束の糸口が若干見えてきた感があるが、残りの研究期間を考えると、現時点で当初予定していた研究遂行は非常に困難であると言わざるを得ない。従って、次年度最終年度を迎えるにあたり、研究期間の延長申請を行う事を考えている。
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Waseda University, 01 Apr. 2018 - 31 Mar. 2023Fluid-Structure Interaction Modeling of Heart Valves and Red Blood Cells心臓弁の開閉に伴い、その内側を流れる赤血球を含む血液は1)流速3 m/sから急激に静止する強い非定常性、2)弁尖同士に挟まれるという 特異性がある。そのため、実験での観測が極めて困難であり、従来の数値計算でも再現できない。従って、弁の開閉やそれに伴う血流動態といった物理の解明には至っていない。本研究では、心臓の弁近傍の血流動態の解明に向け、流体構造連成解析手法を拡張する。具体的には、弁を 含む流体構造連成問題、高速流れ中の赤血球挙動、心臓弁開閉時の赤血球挙動の数値計算手法を順に構築する。統合した手法を用い、赤血球が 弁の開閉時にどのように振る舞うかを詳細に再現することで、血流動態を明らかにする。これにより、心臓弁の機能を損なう疾患の予防・治療 方法に、力学的視点から新たな指針を提示することを目的としている。
本研究では、心臓弁の開閉が起こるようなトポロジー変化が起きる空間を占める流体を、物体適合格子を用いて計算する手法を構築している。この方法は従来の信頼のある解析手法を損なうことなく同時にトポロジー変化も考慮できる方法で、トポロジー変化に特化した手法に比べ信頼性が高い。この方法による計算から、弁が閉じる際に流速は必ずしも徐々に小さくなるわけではないことが示されており、開閉時に生じる速度境界層を捉えることの重要性などがわかる。この事実から、他手法では議論しにくい開閉近傍の現象解明を数値計算により検証ができるようになっている。また赤血球を含む流体解析は多く場合、その影響度合いの高い毛細血管のような低速の箇所であるが、本研究では速度の高い領域での赤血球挙動を議論するために、Navier-Stokes方程式に基づく流体と赤血球の連成問題について取り組んでいる。 - Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Research (Exploratory), Kobe University, 30 Jul. 2020 - 31 Mar. 2022An integrated analysis of biomechanics of cytokinesis: in vitro experiment and computer simulationIn cells, two talins form a homodimer, connecting to each other at the C-terminus dimerization domain. We hypothesized that an alteration in the talin dimer structure changes the dynamics of cytokinesis. To test the hypothesis, we performed a three-dimensional time-lapse imaging of MDA-MB-231 cells, expressing talin-GFP which forms heterodimers with endogenous talin. We show that the cytokinesis orientation was changed to more oblique rather than horizontal by expressing talin-GFP.
- 日本学術振興会, 科学研究費助成事業, 新学術領域研究(研究領域提案型), 神戸大学, 01 Apr. 2019 - 31 Mar. 2021ニューロンの四つの移動モードの数理・計算モデルの開発本研究課題の目的は,大脳新皮質を構成する興奮性ニューロンの四つの移動モードに対する数理モデルを開発し,大脳新皮質の形成過程を数値解析するための基盤技術を構築することである.大脳新皮質のインサイドアウト構造の形成にはリーリンと呼ばれる分子が必要であり,リーリンはニューロンの四つの移動モード全ての制御に関わっていることが分かっている.ここでは,リーリンによる細胞骨格分子,細胞接着分子の制御に着目し,その効果を細胞骨格分子の重合・脱重合速度の変化,あるいは細胞接着分子の結合・離脱速度の変化としてモデル化する.大規模な数値解析によってこれらのパラメータの変化とニューロンの形態・挙動の変化の関係を力学法則に基づき定量的に理解する.ここでは,細胞を一様な非圧縮の粘弾性体と仮定し,細胞外部の粘性流体との流体構造連成問題としてモデル化した.細胞接着分子のリガンドレセプタ結合にはスリップボンドモデルを採用し,モンテカルロ法を用いて計算した.細胞表面にリガンド,細胞外部の足場にレセプタを分布させ,これらの結合による接着力を埋め込み境界法を用いて流体構造連成計算と連立した.ニューロンのモデルにほとんど同じ物性値を設定し,繊維のネットワーク状の足場とロッド状の足場にそれぞれ配置した.繊維のネットワーク状の足場に配置したニューロンは多極性移動でみられるような挙動を示した.一方,ロッド状の足場に配置したニューロンはロコモーションでみられるような挙動を示した.これらの結果から,多極性移動からロコモーションへの移動モードの変化では,細胞接着の足場となる細胞環境の変化が主な要因であり,細胞の力学特性や生化学特性の変化は二次的な効果となる可能性が示唆された.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), 01 Apr. 2017 - 31 Mar. 2021Development of computational biomechanics of the gastrointestinal systemWe developed a numerical model of gastric flow using computational fluid dynamics, medical imaging, and electrophysiology. We showed that impaired coordination between antral contraction and pyloric closure can result in delayed gastric emptying and bile reflux. We also found that slow wave velocity changed with interstitial cells of Cajal loss and aging, resulting in changes in emptying rate.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Tohoku University, 01 Apr. 2017 - 31 Mar. 2021Upgrading Microbial BiomechanicsBy using an original method that carefully builds up physical laws from the nanoscale to the macroscale, we have clarified the behavior and biological functions of sperm, microalgae, ciliates, E. coli, yeast, and other organisms under mechanical environments. We succeeded in analyzing through the scale hierarchy from the movement of ciliary axonemes driven by molecular motors, synchronization of flagellar movement, swimming and biological responses of ciliates with many flagella, two-body interactions and cooperative swimming, rheology and diffusion properties as a continuum, cell growth and accumulation, and so on. These results were published in a total of 48 peer-reviewed journal articles, including two in PNAS, one in Science Adv, and six in J Fluid Mech. In addition, 8 press releases were issued to widely publicize the research results.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Research (Exploratory), Kobe University, 29 Jun. 2018 - 31 Mar. 2020Physiological fluid mechanics of intestineWe have developed a numerical model of “Rectosigmoid brake”. We constructed a geometry model of the large intestine based on medical imaging data. We gave retrograde waves to the geometry model, where the waves initiated at the rectosigmoid, and travelled along the sigmoid colon. We applied the cumulant lattice Boltzmann method and the adaptive subdomain method for computational fluid dynamics simulation. We showed that pressure at the rectum was decreased by the retrograde waves.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Tohoku University, 01 Apr. 2016 - 31 Mar. 2019The recurrent laryngeal nerve search system to detect nerve saltatory conduction by magnetic stimulation in esophageal cancer surgeryA reliable method is required for the search of recurrent laryngeal nerve during esophagectomy. We found the following new findings using the sciatic nerve of the small animals such as rat and rabitt. First, the occurrence interval of saltatory conduction is about 45 mm. Second, it is possible to distinguish conduction between nerve or other tissue by performing continuous pulse stimulation using the firing characteristics of Na+ channel in the Ranvier's constriction. Unfortunately, even using the lock-in amplifier, it could not detect the firing of the Na+ channel in the Ranvier's constriction by magnetic sensor. In addition, it could not realize the saltatory conduction by continuous pulse stimulation using magnetism. However, a new finding was obtained that the saltatory conduction was occurred jumping over several Ranvier's constriction.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Tohoku University, 01 Apr. 2014 - 31 Mar. 2017Advances in cell suspension mechanics based on the hierarchy structureIn this project, we have succeeded to construct a world leading ‘cell suspension mechanics based on the hierarchy structure’ by combining experiment, theory and numerical simulation. We have clarified many phenomena from nano to macro scale using various cells such as algae, bacteria and blood. Then, the obtained knowledge was utilized to develop devices for engineering and biomedical use. The results have been published as 30 peer review journal papers.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Specially Promoted Research, Tohoku University, 2013 - 2017Integrated nano-biomechanicsWe have established integrated nano-biomechanics by modeling multi-scale physical and biomedical phenomena from the molecular level. By using the established model, we succeeded to numerically simulate various diseases, such as an infectious disease, and developed novel methodologies for medical diagnosis and treatments based on quantitative predictions. Besides, we developed biochips to separate or detect cancer cells and bacteria. These findings have been published as 50 peer reviewed journal papers.
- 日本学術振興会, 科学研究費助成事業, 新学術領域研究(研究領域提案型), 東北大学, 01 Apr. 2014 - 31 Mar. 2016実験的に抽出された分子反応パラメータを導入したマラリア感染赤血球モデルの開発マラリアに感染した赤血球は膜表面に接着タンパクを発現する.この分子反応の発現によりマラリア感染赤血球は微小血管内に接着し,周囲の赤血球を巻き込んだ組織レベルの微小循環障害を引き起こす. 細胞の力学と生化学を連立する計算力学モデルを開発し,接着分子の生化学特性とマラリア感染赤血球挙動の関係に対する大規模パラメトリック計算を実施した.まず単体のマラリア感染赤血球挙動の計算を実施し,次に,多数の正常赤血球と相互作用する微小循環内の挙動を計算することで総合的に検討を行った.血管内皮細胞上にTSPやCD36がレセプタとして存在している場合,マラリア感染赤血球は定常接着をすると報告されているが,このような定常接着は離脱頻度が1/s以下の場合に生じることを明らかにした.またレセプタとしてICAM-1が存在する場合,マラリア感染赤血球は回転運動をすることが知られているが,ICAM-1は結合に作用する力にほとんど依存しない結合特性を有することを明らかにした. また,開発した計算力学モデルをより一般的なカプセル懸濁液のレオロジー解析や白血球・腫瘍細胞の流動・接着の問題に応用した.マラリアと同様,白血球の接着は生体防御において,腫瘍細胞の接着はがん転移において重要な過程であり,古くから血管壁面の「Rolling」や定常接着が調べられてきた.我々はセレクチンを発現した毛細血管内の細胞挙動を計算し,毛細血管径が細胞径より小さくなると,細胞は管の中央を移動する「Bullet」挙動を示すことを明らかにした.このときリガンド‐レセプタ結合によって細胞の移動速度は著しく減少し,レセプタ密度が十分低い領域においても定常接着とみなせるような速度となることを示した.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Exploratory Research, Tohoku University, 01 Apr. 2014 - 31 Mar. 2016A numerical study of functional dyspepsiaTo understand the relationship between the peristaltic contraction and the flow in the stomach, we have developed a numerical model of gastric flow. This model is based on a multi-phase flow modeling, an anatomically realistic geometry of the stomach, and a parametric model of peristaltic contractions. Antral recirculation is generated in the stomach. Our result shows that when peristaltic wave velocity increases, the strength of antral recirculation increases, resulting in enhancement of gastric mixing. We also show that mixing strength per one contraction becomes lower when the initiation period of peristaltic contractions is shorter.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Young Scientists (A), Tohoku University, 01 Apr. 2012 - 31 Mar. 2015Computational biomechanics of interactions between cells and their environment in microcirculationWe developed a graphics processing unit computing method for simulating cellular flows in microcirculation. Fluid mechanics of plasma and cytoplasm is coupled with solid mechanics of membrane, and ligand-receptor bindings for cell adhesion. We quantified the deformation of red blood cells and the rheology of red blood cell suspension. We also analyzed margination, rolling motion and firm adhesion of white blood cells and circulating tumor cells in microcirculatory blood flows.
- 日本学術振興会, 科学研究費助成事業, 基盤研究(S), 東北大学, 31 May 2011 - 31 Mar. 2014生体流れに関わる疾患の診断・治療・予防のための計算ナノバイオメカニクスの新展開平成25年度(平成25年4月1日~平成25年4月25日)の研究内容は,細胞スケールにおける生体力学および分子生物学の融合を目指したシミュレーション技術の開発であり,主な成果は以下のとおりである. (1) 平成24年度に開発した細胞の接着に関連するligand-receptor結合の計算力学モデルについて,これを格子ボルツマン法と有限要素法に基づく流体-膜連成計算手法へと導入し,血小板血栓形成,マラリア感染赤血球の血管内皮細胞上の回転運動,がん細胞の血管内皮細胞への接着を対象としたシミュレーション手法の開発に着手した. (2) 平成24年度にクライオ電子線トモグラフィー法を用いて解明した気管繊毛の三次元内部構造を考慮し,ダイニン分子の滑り運動に由来する個々の気管繊毛の運動と,これによって駆動される周囲の流れ場の連成シミュレーション手法の開発に着手した. (3) 平成24年度までに赤血球の希薄・準希薄懸濁液を対象として,境界要素法と有限要素法に基づく流体-膜連成計算手法を開発し,循環器のマクロスケールの解析で必要となる粒子応力テンソル,自己拡散テンソルを算出している.これを赤血球濃厚懸濁液へと拡張するため,細胞濃厚懸濁液を対象とした大規模GPUシミュレーション手法の開発に着手した. (4) 平成24年度に開発した実形状の胃に対する液体食物流動(食物攪拌)の計算力学モデルについて,これを相の異なる液体や固体運動を連成する手法へと改良し,様々な食物および胃液などの流動を解析するための計算力学モデルの開発に着手した.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Tokyo Institute of Technology, 01 Apr. 2011 - 31 Mar. 2014Large-scale simulations for gas-liquid two-phase flow-structure interaction using GPU supercomputerIn spite of unknown complex dynamics of two-phase flows including gas-liquid interfaces, it is hard to study them with high spatial resolution by numerical computation due to quit less efficiency of parallel computing. By using a large number of GPUs equipped with high computational performance, we have developed a numerical simulator of gas-liquid two-phase flows with high resolution by introducing a new CLSVOF (Coupled Level Set with Volume of Fluid) method, a Pressure Poisson solver of Multi-grid preconditioned BiCGSTAB and IBM (Immersed Boundary Method). In order to get high parallel scalability, an overlapping technique between computation and communication is indispensable.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Young Scientists (B), Tohoku University, 2008 - 2010Development of computational biomechanics of gastric mixingWe developed a computational fluid dynamics model of gastric mixing. Moving wall condition of antral contraction wave and free-surface condition of gastric gas were given as boundary conditions of the numerical model. We investigated the effects of physiological conditions such as the viscosity and volume of food bolus and the antral contraction wave pattern on the mixing efficiency and fluid stress in the stomach.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (S), Tohoku University, 2007 - 2010Computational nano-biomechanics for the diagnosis, treatment, and prevention of diseases of blood, circulatory, and digestive organsWe have developed computational nano-biomechanics for the diagnosis, treatment, and prevention of diseases of blood, circulatory, and digestive organs. We proposed a novel hemodynamic index to predict the initiation of cerebral aneurysms. A numerical model of microvascular blood flow was developed for simulating microvascular occlusion in malaria infection, and thrombogenesis. A model of swimming microorganisms was also developed for analyzing intestinal flora.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Tokyo Institute of Technology, 2007 - 2009Development of Multi-Purpose CFD Core using Multi-Moment Scheme次世代の流体解析(CFD)において、流体方程式を格子点上の値、線積分平均値、面積分、体積積分平均値を従属変数として解く多モーメント手法が高精度かつ安定な計算を行うために有効である。直交格子に適合細分化格子法を導入することで解像度制御を行い、保存形IDO法による圧縮性流体計算、非圧縮性流体計算、乱流計算、多相流計算などの様々な流体問題に適用できる高性能な計算コアを開発する。
- 日本学術振興会, 科学研究費助成事業, 若手研究(スタートアップ), 東北大学, 2006 - 2007消化管内容物輸送シミュレータによる消化器系疾患の病態生理研究消化管内ガス,食塊,消化液の混相流問題では,領域によって解像するべき流れのスケールが大きく異なる.例えば気相・液相の界面において適切な格子サイズを用いなければ,界面近傍の解が拡散的になる.さらに蠕動運動によって生じる胃壁の移動境界や将来的に導入する食塊の粒子成分の近傍などにおいても同様に,局所的に高解像度の格子が要求される.任意領域の格子解像度を局所的に変化させるAdaptive Mesh Refinement(AMR)法はこのための有望な解決法であるが,粗い格子と細かい格子の境界において流体変数の補間や非等間隔の離散化が必要となるため,2次精度までの手法しか報告されていなかった.Interpolated Differential Operator(IDO)法を適用し,3次元Navier-Stokes方程式に対して4次精度の定式化を行い,医用画像ベースの生体内流動問題に適用し,本手法によって高精度なマルチスケール解析が可能であることを確認した.AMR法を用いた場合,非圧縮性流体の半陰的解法に必要となる圧力のPoisson方程式の係数行列が著しく不規則になるため収束性が悪化する.IDO法の係数行列は非対称な疎行列であるが,従来の差分法と同様,Algebraic Multi-grid(AMG)法を適用することでこれを改善できることを確認した.胃内部の食塊流動問題へ適用するための界面追跡および捕獲法として,Constrained Interpolated Profile-Conservative Semi-Lagrangian3(CIP-CSL3)法およびTangent of Hyperbola for Interface Capturing(THINC)法をIDO法に適合させた,Semi-Lagrange法であるこれらの手法をEuler法として定式化し,記述が簡易になる一方で従来の方法と同等または優れた界面捕獲法となりえることを確認した.2次元の胃内部食塊流動問題に適用し,消化管内ガスの影響に関する基礎的知見を得た.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Tohoku University, 2004 - 2006Mechanism of the formation, destruction, and movement of thrombi responsible for ischemia of vital organsWe investigated multi-scale behaviors of the formation, destruction, and movement of thrombi under blood flow that are responsible for ischemia of vital organs by using computer simulation and in vitro experiments based on biomechanics. We carried out computer simulations based on a Stokesian Dynamics method and a particle method to characterize the relationships between physiological and fluid mechanical factors in platelet aggregation under blood flow. We determined the relationships between deformation of red blood cells and apparent blood flow resistance. The result indicated that interactions among blood cells play a pivotal role in blood flow properties. It was also shown that biological/mechanical interactions among different types of blood cells determine thrombogenesis process. We established an in vitro quantitative measurement of blood flow through micro channel with micro PIV system, and obtained a spatiotemporal velocity fluctuation in blood flow that depends on hemaetocrit values. This indicated that mechanical interaction among blood cells governs blood flow properties. We proposed a large-scale computer simulation model of flow of red blood cells with the Earth Simulator, and established mathematical formulae of blood flow that can explain hierarchical mechanical behaviors of blood flows from the scale of blood cells (jam) to large vessel (cm). We also developed an integrated computer model of the left ventricle and the aorta, and demonstrated that the model is practically useful in detailed evaluation of the vortex and stagnation, which greatly affects thrombogenesis, in heart and large arteries.
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Priority Areas, Tohoku University, 2003 - 2006Study on Mechanisms of the Development of Cardiovascular and Cerebrovascular DiseasesHuman cardiovascular system is always under the integrated nervous and Humoral control of the whole body, i.e., in homeostasis. Multiple feedback mechanisms with mutual interactions among systems, organs, and even tissues provide integrated control of the entire body. These control mechanisms have different spatial coverage, from the micro- to macroscale, and different time constants, from nanoseconds to decades. Based on this consideration, we investigated the cardiovascular system over micro to macro levels by using conjugated computational mechanics analyzing fluid and solid interactions in the research project. We studied blood flow in the aorta with beating left ventricle as a power source, ATP transport in a cerebral artery with aneurysm, the progress of cerebral aneurysm due to adaptation of arterial wall, the blood flow considering more than 16 thousands of red blood cells' motion, and platelets aggregation in blood flow using a particle method developed for the purpose. The aortic blood flow showed independence from the intraventricular vortices formation downstream from the aortic arch, where the three dimensional configuration of the aorta determined the global flow structure. Transport and distribution of ATP molecule was found to be strongly dependent on the relative position of aneurysms to the mother arteries. The particle method developed in the present study showed its potential to represent the microscale aggregation process of the platelet in the blood flow. In considering clinical applications, however, one needs to include more about biological complexities in the analysis of blood flow, especially with respect to disease processes. A disease is not just a failure of machine. It is an outcome of complex interactions among multi-layered systems and subsystems. We expect that biological phenomena, including disease processes, will be clarified in the future by integrating new understandings of macroscale and microscale hemodynamics.