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Search DetailsIMASAKI TsuyoshiGraduate School of Medicine / Faculty of Medical SciencesAssistant Professor
Research activity information
■ Award■ Paper
- Microtubule nucleation is commonly viewed as a γ-tubulin ring complex (γ-TuRC)-templated process, yet many differentiated cells build extensive non-centrosomal microtubule arrays of unclear origin. Although spontaneous tubulin nucleation has long been observed in vitro as a γ-TuRC-independent nucleation process, its mechanism and cellular relevance have remained unclear. Here we show that CAMSAP2, a microtubule minus-end-binding protein, links spontaneous nucleation to non-centrosomal microtubule organization. Cryo-electron microscopy (cryo-EM), high-speed atomic force microscopy (hsAFM), and molecular dynamics simulations reveal that CAMSAP2 lowers the nucleation barrier by straightening tubulin oligomers and promoting lateral protofilament interactions that drive sheet formation and closure into microtubules. hsAFM captures stepwise nucleation and early growth, revealing that tubulin rings can serve as productive intermediates rather than dead-end depolymerization products. CAMSAP2 further self-organizes through liquid-liquid phase separation (LLPS) to concentrate tubulin and assembly intermediates, thereby promoting efficient microtubule formation at non-centrosomal microtubule-organizing centers. In HeLa cells, dispersed CAMSAP2 condensates act as γ-TuRC-independent microtubule-organizing centers alongside centrosomal asters, supporting a model in which spontaneous nucleation contributes to non-centrosomal microtubule biogenesis.openRxiv, May 2026, bioRxiv
- Springer Science and Business Media LLC, Jan. 2026, Scientific Reports, 16(1) (1)[Refereed]Scientific journal
- Abstract Microtubule severing enzyme spastin plays pivotal roles in cytokinesis and neuronal outgrowth, and its mutations cause hereditary spastic paraplegia (HSP). Here we show that, at physiological tubulin concentrations, human spastin behaves predominantly as an ATPase- independent microtubule nucleator rather than a severase. Biochemical and structural analyses revealed that spastin assembles tubulin into stacked-ring intermediates via strategically positioned microtubule-binding domains, thereby generating nucleation-competent sites for polymerization. Tubulin subunits within these spastin-induced rings adopt a straight, microtubule-like interface, in marked contrast to the twisted tubulin spirals characteristic of depolymerizing microtubule ends. Our results redefine the mechanistic landscape of multifaceted spastin functions and provide insights that may inform the pathological basis of HSP and guide future therapeutic strategies.Cold Spring Harbor Laboratory, Nov. 2025, bioRxiv
- Apr. 2025, iScience[Refereed]Scientific journal
- Abstract The spectraplakin family protein GAS2 was originally identified as a growth arrest-specific protein, and recent studies have revealed its involvement in multiple cellular processes. Its dual interaction with actin filaments and microtubules highlights its essential role in cytoskeletal organization, such as cell division, apoptosis, and possibly tumorigenesis. However, the structural basis of cytoskeletal dynamics regulation by GAS2 remains unclear. In this study, we present cryo-electron microscopy structures of the GAS2 type 3 calponin homology domain (CH3) in complex with F-actin at 2.8 Å resolution, thus solving the first type CH3 domain structure bound to F-actin and confirming its actin-binding activity. We also provide the first near-atomic resolution cryo-EM structure of the GAS2-GAR domain bound to microtubules and identify conserved microtubule-binding residues. Our biochemical experiments show that GAS2 promotes microtubule nucleation and polymerization, and that its C-terminal region is essential for dimerization, bundling of both F-actin and microtubules, and microtubule nucleation. As mutations leading to expression of C-terminally truncated GAS2 have been linked to hearing loss, these findings suggest that the disruption of GAS2-dependent cytoskeletal organisation could underlie auditory dysfunction.Springer Science and Business Media LLC, Apr. 2025, The EMBO Journal[Refereed]Scientific journal
- Abstract Irgb6 is a priming immune‐related GTPase (IRG) that counteracts Toxoplasma gondii. It is known to be recruited to the low virulent type II T. gondii parasitophorous vacuole (PV), initiating cell‐autonomous immunity. However, the molecular mechanism by which immunity‐related GTPases become inactivated after the parasite infection remains obscure. Here, we found that Thr95 of Irgb6 is prominently phosphorylated in response to low virulent type II T. gondii infection. We observed that a phosphomimetic T95D mutation in Irgb6 impaired its localization to the PV and exhibited reduced GTPase activity in vitro. Structural analysis unveiled an atypical conformation of nucleotide‐free Irgb6‐T95D, resulting from a conformational change in the G‐domain that allosterically modified the PV membrane‐binding interface. In silico docking corroborated the disruption of the physiological membrane binding site. These findings provide novel insights into a T. gondii‐induced allosteric inactivation mechanism of Irgb6.Wiley, Nov. 2023, Genes to Cells[Refereed]Scientific journal
- Mutations in the LMNA gene encoding Lamin A and C (Lamin A/C), major components of the nuclear lamina, cause laminopathies including dilated cardiomyopathy (DCM), but the underlying molecular mechanisms have not been fully elucidated. Here, by leveraging single-cell RNA sequencing (RNA-seq), assay for transposase-accessible chromatin using sequencing (ATAC-seq), protein array, and electron microscopy analysis, we show that insufficient structural maturation of cardiomyocytes owing to trapping of transcription factor TEA domain transcription factor 1 (TEAD1) by mutant Lamin A/C at the nuclear membrane underlies the pathogenesis of Q353R -LMNA– related DCM. Inhibition of the Hippo pathway rescued the dysregulation of cardiac developmental genes by TEAD1 in LMNA mutant cardiomyocytes. Single-cell RNA-seq of cardiac tissues from patients with DCM with the LMNA mutation confirmed the dysregulated expression of TEAD1 target genes. Our results propose an intervention for transcriptional dysregulation as a potential treatment of LMNA -related DCM.American Association for the Advancement of Science (AAAS), Apr. 2023, Science Advances, 9(15) (15)[Refereed]Scientific journal
- Abstract Kinesin superfamily proteins are microtubule-based molecular motors driven by the energy of ATP hydrolysis. Among them, the kinesin-4 family is a unique motor that inhibits microtubule dynamics. Although mutations of kinesin-4 cause several diseases, its molecular mechanism is unclear because of the difficulty of visualizing the high-resolution structure of kinesin-4 working at the microtubule plus-end. Here, we report that KLP-12, a C. elegans kinesin-4 ortholog of KIF21A and KIF21B, is essential for proper length control of C. elegans axons, and its motor domain represses microtubule polymerization in vitro. The crystal structure of the KLP-12 motor domain complexed with tubulin, which represents the high-resolution structural snapshot of inhibition state of microtubule-end dynamics, revealed the bending effect of KLP-12 for tubulin. Comparison with the KIF5B-tubulin and KIF2C-tubulin complexes, which represent the elongation and shrinking forms of microtubule ends, respectively, showed the curvature of tubulin introduced by KLP-12 is in between them. Taken together, KLP-12 controls the proper length of axons by modulating the curvature of the microtubule ends to inhibit the microtubule dynamics.Lead, Cold Spring Harbor Laboratory, Sep. 2022, eLife[Refereed]Scientific journal
- Microtubules are dynamic polymers consisting of αβ-tubulin heterodimers. The initial polymerization process, called microtubule nucleation, occurs spontaneously via αβ-tubulin. Since a large energy barrier prevents microtubule nucleation in cells, the γ-tubulin ring complex is recruited to the centrosome to overcome the nucleation barrier. However, a considerable number of microtubules can polymerize independently of the centrosome in various cell types. Here, we present evidence that the minus-end-binding calmodulin-regulated spectrin-associated protein 2 (CAMSAP2) serves as a strong nucleator for microtubule formation by significantly reducing the nucleation barrier. CAMSAP2 co-condensates with αβ-tubulin via a phase separation process, producing plenty of nucleation intermediates. Microtubules then radiate from the co-condensates, resulting in aster-like structure formation. CAMSAP2 localizes at the co-condensates and decorates the radiating microtubule lattices to some extent. Taken together, these in vitro findings suggest that CAMSAP2 supports microtubule nucleation and growth by organizing a nucleation centre as well as by stabilizing microtubule intermediates and growing microtubules.Lead, Jun. 2022, eLife, 11, English, International magazine[Refereed]Scientific journal
- Lead, Wiley, Apr. 2019, Protein Science, 28(4) (4), 808 - 822[Refereed]Scientific journal
- Expression of human asparagine synthetase (ASNS) promotes metastatic progression and tumor cell invasiveness in colorectal and breast cancer, presumably by altering cellular levels of L-asparagine. Human ASNS is therefore emerging as a bona fide drug target for cancer therapy. Here we show that a slow-onset, tight binding inhibitor, which exhibits nanomolar affinity for human ASNS in vitro, exhibits excellent selectivity at 10 μM concentration in HCT-116 cell lysates with almost no off-target binding. The high-resolution (1.85 Å) crystal structure of human ASNS has enabled us to identify a cluster of negatively charged side chains in the synthetase domain that plays a key role in inhibitor binding. Comparing this structure with those of evolutionarily related AMP-forming enzymes provides insights into intermolecular interactions that give rise to the observed binding selectivity. Our findings demonstrate the feasibility of developing second generation human ASNS inhibitors as lead compounds for the discovery of drugs against metastasis.2019, Communications biology, 2, 345 - 345, English, International magazine[Refereed]Scientific journal
- The Tau family microtubule-associated proteins (MAPs) promote microtubule stabilization and regulate microtubule-based motility. They share the C-terminal microtubule-binding domain, which includes three to five tubulin-binding repeats. Different numbers of repeats formed by alternative splicing have distinct effects on the activities of these proteins, and the distribution of these variants regulates fundamental physiological phenomena in cells. In this study, using cryo-EM, we visualized the MAP4 microtubule complex with the molecular motor kinesin-1. MAP4 bound to the C-terminal domains of tubulins along the protofilaments stabilizes the longitudinal contacts of the microtubule. The strongest bond of MAP4 was found around the intertubulin–dimer interface such that MAP4 coexists on the microtubule with kinesin-1 bound to the intratubulin–dimer interface as well. MAP4, consisting of five repeats, further folds and accumulates above the intertubulin–dimer interface, interfering with kinesin-1 movement. Therefore, these cryo-EM studies reveal new insight into the structural basis of microtubule stabilization and inhibition of kinesin motility by the Tau family MAPs.Lead, Rockefeller University Press, Dec. 2018, Journal of Cell Biology, 217(12) (12), 4155 - 4163[Refereed]Scientific journal
- May 2018, Microscopy (Oxford, England)[Refereed]
- Lead, Public Library of Science, Apr. 2018, PLoS ONE, 13(4) (4), e0195356, English[Refereed]Scientific journal
- Japan Society for Cell Biology, Feb. 2018, Cell Structure and Function, 43(1) (1), 15 - 23, English[Refereed]Scientific journal
- May 2017, NUCLEIC ACIDS RESEARCH, 45(9) (9), 5217 - 5230, English[Refereed]Scientific journal
- Aug. 2013, PROTEIN EXPRESSION AND PURIFICATION, 90(2) (2), 78 - 83, English[Refereed]Scientific journal
- May 2012, STRUCTURE, 20(5) (5), 899 - 910, English[Refereed]Scientific journal
- Feb. 2012, TRENDS IN BIOCHEMICAL SCIENCES, 37(2) (2), 49 - 57, English[Refereed]
- Sep. 2011, JOURNAL OF BIOLOGICAL CHEMISTRY, 286(35) (35), 30526 - 30534, English[Refereed]Scientific journal
- Lead, Jul. 2011, NATURE, 475(7355) (7355), 240 - U45, English[Refereed]Scientific journal
- Nov. 2010, ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 66, 1528 - 1530, English[Refereed]Scientific journal
- Jul. 2010, BIOCHEMISTRY, 49(27) (27), 5705 - 5713, English[Refereed]Scientific journal
- Mar. 2010, NATURE STRUCTURAL & MOLECULAR BIOLOGY, 17(3) (3), 273 - U31, English[Refereed]Scientific journal
- Apr. 2009, STRUCTURE, 17(4) (4), 559 - 567, English[Refereed]Scientific journal
- Oct. 2007, MOLECULAR CELL, 28(1) (1), 57 - 67, English[Refereed]Scientific journal
- Aug. 2006, ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 62, 785 - 787, English[Refereed]Scientific journal
- Feb. 2005, JOURNAL OF BIOLOGICAL CHEMISTRY, 280(7) (7), 5605 - 5610, English[Refereed]Scientific journal
- Jun. 2004, ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 60, 1165 - 1166, English[Refereed]Scientific journal
- Jul. 2025, ファルマシア, 61(7) (7), 647 - 651, Japanese[Refereed][Invited]
- 2024, 日本解剖学会総会・全国学術集会抄録集(CD-ROM), 129th骨髄微小環境ニッチによる造血幹細胞の老化制御戦略
- Lead, Aug. 2023, Seikagaku, Japanese[Refereed][Invited]
- 2023, 日本解剖学会総会・全国学術集会抄録集(CD-ROM), 128thクロマチンリモデリング因子BRMは骨髄微小環境ニッチを介して造血幹細胞を維持する
- (公財)金原一郎記念医学医療振興財団, Aug. 2020, 生体の科学, 71(4) (4), 298 - 303, JapaneseMAPs: microtubule associated proteins
- Apr. 2010, FASEB JOURNAL, 24, EnglishMediator Structure and Interaction with the Basal Transcription MachinerySummary international conference
- Contributor, 細胞骨格が制御する細胞内の営みをトランススケールに理解する (仁田亮, 今崎剛 ), 羊土社, Mar. 2020, Japanese, ISBN: 9784758103855イメージング時代の構造生命科学 : 細胞の動態、膜のないオルガネラ、分子の構造変化をトランススケールに観る
- Contributor, 分子構造解析で何が見えるか (今崎剛, 仁田英里子, 仁田亮), 南山堂, Apr. 2019, Japanese, ISBN: 9784525249410新しい臨床を開拓するための分子循環器病学
- 日本薬学会第146年会, Mar. 2026細胞骨格ダイナミクスのトランススケール解析Public symposium
- 第131回 日本解剖学会総会 ・ 全国学術集会, Mar. 2026細胞極性を決定する微小管ネットワーク形成の分子機構[Invited]Nominated symposium
- The 63rd Annual Meeting of the Biophysical Society of Japan, Sep. 2025, EnglishDirect observation of CAMSAP2-induced microtubule and aster formation processes usinghigh-speed AFM and cryo-EM[Invited]Public symposium
- 日本顕微鏡学会 第81回学術講演会, Jun. 2025クライオ電子顕微鏡解析によるグラム陰性菌を対象とした抗菌薬の作用機構の解明[Invited]Invited oral presentation
- The 24th Annual Meeting of the Protein Science Society of Japan, Jun. 2024Molecular mechanisms in force generation of minus-end directed kinesin 14[Invited]Public symposium
- The 129th Annual Meeting of The Japanese Association of Anatomists, Mar. 2024, EnglishStructural basis of minus-end directed motility of dimeric kinesin-14 along microtubule[Invited]Nominated symposium
- 日本顕微鏡学会第 65 回シンポジウム, Nov. 2022, Japanese微小管による細胞極性形成制御機構の構造研究[Invited]Nominated symposium
- 日本顕微鏡学会 生体解析分科会研究会 「バイオ向けクライオ透過電子顕微鏡の多様性の最前線3」, Nov. 2022, Japanese拡張型心筋症の病態解明に向けた FIB-SEM〜クライオTEMの試み[Invited]
- 日本顕微鏡学会 生体解析分科会研究会 on-lineミニシンポジウム「バイオ向けクライオ透過電子顕微鏡の多様性の最前線2」, Mar. 2022Practical methods for in situ structural biology on clinical samples[Invited]Invited oral presentation
- The 127th Annual Meeting of The Japanese Association of Anatomists, Mar. 2022Structural basis of microtubule dynamics inhibition by Kinesin-4Oral presentation
- The 64th Symposium of The Japanese Society of Microscopy, Nov. 2021Applications of in situ cryo electron microscopy in biology and medicineInvited oral presentation
- 第126回 日本解剖学会総会・全国学術集会 第98回 日本生理学会大会, Mar. 2021The mechanism of microtubule nucleating center formation by CAMSAP2Oral presentation
- 日本顕微鏡学会 第76回学術講演 (誌上開催), May 2020, JapaneseStructural mechanism of non-centrosomal microtubule nucleation[Invited]Nominated symposium
- The 94th Annual Meeting of The Japanese Association of Anatomists at Kinki, Nov. 2018, Japanese, Domestic conferenceStructural study of the Microtubule-MAP4 complex analyzed by Cryo-EMOral presentation
- Asia Pacific International Congress of Anatomists, Oct. 2018, English, TI_APICA8-Abstract.pdf, Others, abstract, International conferenceCryo-EM analysis revealed how microtubule-associated protein 4 (MAP4) controls microtubule stability and kinesin motility[Invited]Invited oral presentation
- The 39th Annal Meeting of the Molecular Biology Society of Japan, Japanese, Domestic conferenceIntegrated approach for structural biology of multisubunit complexes.[Invited]Public symposium
- 日本顕微鏡学会Jun. 2025 - Present
- The Japanese Association of AnatomistsApr. 2018 - Present
- The Molecular Biology Society of JapanJul. 2010 - Present
- JST, FOREST, Apr. 2022 - Mar. 2029, Principal investigatorMechanism of microtubule based cell polarity formation in situ
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research, Grant-in-Aid for Transformative Research Areas (A), Kobe University, Apr. 2025 - Mar. 2027Molecular Mechanism Underlying Helical Growth in Plants Induced by Microtubule Biological Clusters
- 国立研究開発法人日本医療研究開発機構, 革新的先端研究開発支援事業, Oct. 2021 - Mar. 2027, Coinvestigator革新的化合物探索・合成手法による新規抗菌アジュバントの創出
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C), Grant-in-Aid for Scientific Research (C), Kobe University, Apr. 2022 - Mar. 2025a
- Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C), Grant-in-Aid for Scientific Research (C), Kobe University, Apr. 2019 - Mar. 2022, Principal investigatorStructural study of Mediator CDK moduleThe transcription mediator complex is a multi-protein complex that regulates RNA polymerase II (Pol II) transcription. The transcription mediator complex is composed of four modules with more than 25 subunits, of which the CDK module, composed of four subunits, activates transcription by phosphorylation through the kinase domain and also represses through interaction with other proteins. In this study, we developed a new multi-protein complex preparation technique and analyzed the structure of the CDK module by cryo-EM single-particle analysis to elucidate one aspect of its phosphorylation function.
- JST, PRESTO, Oct. 2014 - Mar. 2018, Principal investigatorStructure determination of Mediator CDK moduleCompetitive research funding
